View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15705_high_27 (Length: 248)
Name: NF15705_high_27
Description: NF15705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15705_high_27 |
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Alignment Details
Target: chr8 (Bit Score: 181; Significance: 7e-98; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 2540800 - 2540581
Alignment:
| Q |
16 |
caaaaatacaaaacaaatataatttctttaaatattttaaaagccgcaattaaaacttatacatatgattataagtttattgtactaggtcttaaaagtg |
115 |
Q |
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| T |
2540800 |
caaaaatacaaaacaaatataatttctttaatcattttaaaagccgcaattaaaacttataca-atgattataagtttattgtactaggtcttaaaagtg |
2540702 |
T |
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| Q |
116 |
aacgttagatatactaaatacctgaataagaatatttttgttggtgcaaggaccgctaaaacttagtttcgacaccataaatgtttttcctgctggtatg |
215 |
Q |
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| T |
2540701 |
aatgttagatatattaaatacctgaataagaatatgtttgttggtgcaaggaccgttaaaacttagtttcgacaccataaatgtttttcctactggtata |
2540602 |
T |
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| Q |
216 |
accagtgttgacatctctgct |
236 |
Q |
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| T |
2540601 |
accagtgttgacatctctgct |
2540581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 2531477 - 2531245
Alignment:
| Q |
16 |
caaaaatacaaaacaaatataatttctttaaatattttaaaagccgcaattaaaa------------cttatacatatgattataagtttattgtactag |
103 |
Q |
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| T |
2531477 |
caaaaatacaaaacaaatataatttctttaaatattttaaaagccgcaattaaaaatacaattaaaacttatacatatgattataagtttattgtactag |
2531378 |
T |
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| Q |
104 |
gtcttaaaagtgaacgttagatatactaaatacctgaataagaatatttttgttggtgcaaggaccgctaaaacttagtttcgacaccataaatgttttt |
203 |
Q |
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| T |
2531377 |
gtcttaaaagtgaatgttagatatattaaatacctgaataagaatatttttgttggtgcaaggaccgctaaaacttagtttcgacaccataaatgttttt |
2531278 |
T |
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| Q |
204 |
cctgctggtatgaccagtgttgacatctctgct |
236 |
Q |
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| T |
2531277 |
cctacgggtatgaccagtgttgacatctctgct |
2531245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 166 - 230
Target Start/End: Complemental strand, 1827912 - 1827848
Alignment:
| Q |
166 |
gaccgctaaaacttagtttcgacaccataaatgtttttcctgctggtatgaccagtgttgacatc |
230 |
Q |
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| T |
1827912 |
gaccgctaaaaattactttcgacaccataaatgtttttcctgccggtataactagtgttgacatc |
1827848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 166 - 230
Target Start/End: Complemental strand, 1862357 - 1862293
Alignment:
| Q |
166 |
gaccgctaaaacttagtttcgacaccataaatgtttttcctgctggtatgaccagtgttgacatc |
230 |
Q |
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| T |
1862357 |
gaccgctaaaaattactttcgacaccataaatgtttttcctgccggtataactagtgttgacatc |
1862293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 236
Target Start/End: Complemental strand, 2562505 - 2562429
Alignment:
| Q |
160 |
tgcaaggaccgctaaaacttagtttcgacaccataaatgtttttcctgctggtatgaccagtgttgacatctctgct |
236 |
Q |
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| T |
2562505 |
tgcaaggaccactaaaatttgctttcgacaccatgtatttttttccagctggtattattagtgttgacatccctgct |
2562429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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