View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15705_high_29 (Length: 242)

Name: NF15705_high_29
Description: NF15705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15705_high_29
NF15705_high_29
[»] chr3 (6 HSPs)
chr3 (82-225)||(44606015-44606158)
chr3 (1-75)||(21295902-21295976)
chr3 (1-75)||(46823774-46823848)
chr3 (2-76)||(17653090-17653164)
chr3 (1-45)||(11027985-11028029)
chr3 (1-45)||(16152230-16152274)
[»] chr8 (3 HSPs)
chr8 (1-75)||(41323283-41323357)
chr8 (1-75)||(4072329-4072403)
chr8 (1-75)||(21441695-21441769)
[»] chr5 (3 HSPs)
chr5 (1-75)||(13517468-13517542)
chr5 (1-75)||(17769078-17769152)
chr5 (1-45)||(41640170-41640214)
[»] chr4 (2 HSPs)
chr4 (1-75)||(43892624-43892698)
chr4 (1-45)||(48861927-48861971)
[»] chr1 (3 HSPs)
chr1 (1-75)||(10620033-10620107)
chr1 (1-75)||(15757646-15757720)
chr1 (1-45)||(23614569-23614613)
[»] chr7 (5 HSPs)
chr7 (1-76)||(48609207-48609282)
chr7 (1-75)||(39719850-39719923)
chr7 (1-75)||(758800-758873)
chr7 (1-75)||(46211779-46211852)
chr7 (1-64)||(83734-83796)
[»] chr6 (2 HSPs)
chr6 (4-76)||(34729744-34729816)
chr6 (9-75)||(29363655-29363720)


Alignment Details
Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 82 - 225
Target Start/End: Complemental strand, 44606158 - 44606015
Alignment:
Q  82 attctgatgagcaagatagaaatgatgataactctgaagatgagaatgacgcattcttcgatacatatgaaattctaacaacaagttctattagaagtaa 181  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44606158 attctgatgagcaagatagaaatgatgataactccgaagatgagaatgatgcattcttcgatacatatgaaattctaacaacaagttctattagaagtaa 44606059  T
Q  182 tgaatctgaggagacatccagtagtccaactattggatctaact 225  Q
    ||||||||||||||||||||||| ||||||||||||||||||||    
T  44606058 tgaatctgaggagacatccagtaatccaactattggatctaact 44606015  T

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Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 21295976 - 21295902
Alignment:
Q  1 tctttattgttgttattgagacgggaagtatcaaaacaatacaaacatagctatagagtgtgtggtgctggtggg 75  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  21295976 tctttattgttgttactgagacgggaagtatcaaaccaatacaaacatagctataaagtgtgtggtgctggtggg 21295902  T

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Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 46823848 - 46823774
Alignment:
Q  1 tctttattgttgttattgagacgggaagtatcaaaacaatacaaacatagctatagagtgtgtggtgctggtggg 75  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  46823848 tctttattgttgttattgagacggaaagtatcaaaccaatacaaacatagctataaagtgtgtggtgctggtggg 46823774  T

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Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 2 - 76
Target Start/End: Original strand, 17653090 - 17653164
Alignment:
Q  2 ctttattgttgttattgagacgggaagtatcaaaacaatacaaacatagctatagagtgtgtggtgctggtgggt 76  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||| ||||||| || |||||||||||||||||    
T  17653090 ctttattgttgttattgagatgggaagtatcaaaccaatacaaacaaagctataaagcgtgtggtgctggtgggt 17653164  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 11027985 - 11028029
Alignment:
Q  1 tctttattgttgttattgagacgggaagtatcaaaacaatacaaa 45  Q
    |||||||||||||||||||||| |||||||||||| |||||||||    
T  11027985 tctttattgttgttattgagactggaagtatcaaaccaatacaaa 11028029  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 16152274 - 16152230
Alignment:
Q  1 tctttattgttgttattgagacgggaagtatcaaaacaatacaaa 45  Q
    |||||||||||||||||||||| | || ||||||| |||||||||    
T  16152274 tctttattgttgttattgagaccgaaaatatcaaaccaatacaaa 16152230  T

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Target: chr8 (Bit Score: 67; Significance: 7e-30; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 41323283 - 41323357
Alignment:
Q  1 tctttattgttgttattgagacgggaagtatcaaaacaatacaaacatagctatagagtgtgtggtgctggtggg 75  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  41323283 tctttattgttgttattgagacgggaagtatcaaaccaatacaaacatagctataaagtgtgtggtgctggtggg 41323357  T

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Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 4072329 - 4072403
Alignment:
Q  1 tctttattgttgttattgagacgggaagtatcaaaacaatacaaacatagctatagagtgtgtggtgctggtggg 75  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  4072329 tctttattgttgttattgagacggaaagtatcaaaccaatacaaacatagctataaagtgtgtggtgctggtggg 4072403  T

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Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 21441695 - 21441769
Alignment:
Q  1 tctttattgttgttattgagacgggaagtatcaaaacaatacaaacatagctatagagtgtgtggtgctggtggg 75  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||    
T  21441695 tctttattgttgttattgagacgggaagtatcaaaccaatacaaacatagctataaagtgtgtggtgctagtggg 21441769  T

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Target: chr5 (Bit Score: 67; Significance: 7e-30; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 13517542 - 13517468
Alignment:
Q  1 tctttattgttgttattgagacgggaagtatcaaaacaatacaaacatagctatagagtgtgtggtgctggtggg 75  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  13517542 tctttattgttgttattgagacgggaagtatcaaaccaatacaaacatagctataaagtgtgtggtgctggtggg 13517468  T

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Target: chr5; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 17769078 - 17769152
Alignment:
Q  1 tctttattgttgttattgagacgggaagtatcaaaacaatacaaacatagctatagagtgtgtggtgctggtggg 75  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  17769078 tctttattgttgttattgagacgggaagtatcaaaccaatacaaacatagctataaagtgtgtggtgctggtggg 17769152  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 41640170 - 41640214
Alignment:
Q  1 tctttattgttgttattgagacgggaagtatcaaaacaatacaaa 45  Q
    ||||||||||||||||||||||||||||||||||| |||||||||    
T  41640170 tctttattgttgttattgagacgggaagtatcaaaccaatacaaa 41640214  T

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Target: chr4 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 43892624 - 43892698
Alignment:
Q  1 tctttattgttgttattgagacgggaagtatcaaaacaatacaaacatagctatagagtgtgtggtgctggtggg 75  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  43892624 tctttattgttgttattgagacgggaagtatcaaaccaatacaaacatagctataaagtgtgtggtgctggtggg 43892698  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 48861971 - 48861927
Alignment:
Q  1 tctttattgttgttattgagacgggaagtatcaaaacaatacaaa 45  Q
    |||||||||||||||||||||| | || ||||||| |||||||||    
T  48861971 tctttattgttgttattgagaccgaaaatatcaaaccaatacaaa 48861927  T

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Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 10620107 - 10620033
Alignment:
Q  1 tctttattgttgttattgagacgggaagtatcaaaacaatacaaacatagctatagagtgtgtggtgctggtggg 75  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  10620107 tctttattgttgttattgagacgggaagtatcaaaccaatacaaacatagctataaagtgtgtggtgctggtggg 10620033  T

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Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 15757720 - 15757646
Alignment:
Q  1 tctttattgttgttattgagacgggaagtatcaaaacaatacaaacatagctatagagtgtgtggtgctggtggg 75  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||    
T  15757720 tctttattgttgttattgagacgggaagtatcaaaccaatacaaacattgctataaagtgtgtggtgctggtggg 15757646  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 23614613 - 23614569
Alignment:
Q  1 tctttattgttgttattgagacgggaagtatcaaaacaatacaaa 45  Q
    |||||||||||||||||||||| | || ||||||| |||||||||    
T  23614613 tctttattgttgttattgagaccgaaaatatcaaaccaatacaaa 23614569  T

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Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 48609207 - 48609282
Alignment:
Q  1 tctttattgttgttattgagacgggaagtatcaaaacaatacaaacatagctatagagtgtgtggtgctggtgggt 76  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||    
T  48609207 tctttattgttgttattgagacgggaagtatcaaaccaatacaaacaaagctataaagtgtgtggtgctggtgggt 48609282  T

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Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 39719923 - 39719850
Alignment:
Q  1 tctttattgttgttattgagacgggaagtatcaaaacaatacaaacatagctatagagtgtgtggtgctggtggg 75  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||    
T  39719923 tctttattgttgttattgagacgggaagtatcaaaccaatacaaacatagctata-aatgtgtggtgctggtggg 39719850  T

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Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 758873 - 758800
Alignment:
Q  1 tctttattgttgttattgagacgggaagtatcaaaacaatacaaacatagctatagagtgtgtggtgctggtggg 75  Q
    ||||||| ||||||||||||||||||||||||||| ||| ||||||| ||||||| ||||||| |||||||||||    
T  758873 tctttatcgttgttattgagacgggaagtatcaaaccaa-acaaacaaagctataaagtgtgttgtgctggtggg 758800  T

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Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 46211779 - 46211852
Alignment:
Q  1 tctttattgttgttattgagacgggaagtatcaaaacaatacaaacatagctatagagtgtgtggtgctggtggg 75  Q
    ||||||| |||||||||||||||| |||||||||| ||| ||||||| ||||||| |||||||||||||||||||    
T  46211779 tctttatcgttgttattgagacggaaagtatcaaaccaa-acaaacaaagctataaagtgtgtggtgctggtggg 46211852  T

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Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 83734 - 83796
Alignment:
Q  1 tctttattgttgttattgagacgggaagtatcaaaacaatacaaacatagctatagagtgtgtg 64  Q
    ||||||| ||||||||||||||||||||||||||| ||| ||||||| ||||||| ||||||||    
T  83734 tctttatcgttgttattgagacgggaagtatcaaatcaa-acaaacaaagctataaagtgtgtg 83796  T

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Target: chr6 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 4 - 76
Target Start/End: Complemental strand, 34729816 - 34729744
Alignment:
Q  4 ttattgttgttattgagacgggaagtatcaaaacaatacaaacatagctatagagtgtgtggtgctggtgggt 76  Q
    |||||||||||||||||||||||||||||||| ||||||||||| | ||||| ||||||||||||||||||||    
T  34729816 ttattgttgttattgagacgggaagtatcaaaccaatacaaacaaaactataaagtgtgtggtgctggtgggt 34729744  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 29363655 - 29363720
Alignment:
Q  9 gttgttattgagacgggaagtatcaaaacaatacaaacatagctatagagtgtgtggtgctggtggg 75  Q
    |||||||||||||||| |||||||||| ||| ||||||| ||||||| |||||||||||||||||||    
T  29363655 gttgttattgagacggaaagtatcaaaccaa-acaaacaaagctataaagtgtgtggtgctggtggg 29363720  T

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