View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15705_high_35 (Length: 238)
Name: NF15705_high_35
Description: NF15705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15705_high_35 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 42336828 - 42336610
Alignment:
| Q |
18 |
gtgcaattccgtgaggtccaagtttcttgaggtataagttgtatccaatgtgatcgattttcttaatggtaatttttatttttggggtatacttccttta |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
42336828 |
gtgcaattccgtgaggtccaagtttcttgaggtataagttgtatccaatgtgatcgattttcttaatggtaatttta--ttttggggtatacttccttta |
42336731 |
T |
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| Q |
118 |
ataataattattctaatacaccctcgtagtcgagactatatctaagatcatcaaaaagttgcaatgtaagtctctttgtaaagatgtcaacaatttgata |
217 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42336730 |
ataataattattctaatacacccttgtagtcgagactatatctaagatcatcaaaaagttgcaatgtaagtctctttgtaaagatgtcaacaatttgata |
42336631 |
T |
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| Q |
218 |
acgagagtgaacatgtaagac |
238 |
Q |
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||||||||||||||||||||| |
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| T |
42336630 |
acgagagtgaacatgtaagac |
42336610 |
T |
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