View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15705_high_37 (Length: 227)

Name: NF15705_high_37
Description: NF15705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15705_high_37
NF15705_high_37
[»] scaffold0019 (1 HSPs)
scaffold0019 (33-205)||(126678-126850)
[»] chr3 (6 HSPs)
chr3 (14-209)||(16350318-16350513)
chr3 (14-209)||(11990580-11990775)
chr3 (20-76)||(9628753-9628809)
chr3 (14-90)||(9648274-9648350)
chr3 (19-90)||(9657268-9657339)
chr3 (88-202)||(24219845-24219959)
[»] scaffold0308 (1 HSPs)
scaffold0308 (37-205)||(8267-8435)
[»] scaffold0014 (4 HSPs)
scaffold0014 (14-209)||(136642-136837)
scaffold0014 (37-201)||(122030-122194)
scaffold0014 (14-209)||(105274-105469)
scaffold0014 (14-149)||(139626-139761)
[»] chr6 (24 HSPs)
chr6 (14-209)||(16702554-16702749)
chr6 (14-209)||(15715523-15715718)
chr6 (14-209)||(15727704-15727899)
chr6 (19-194)||(24711421-24711596)
chr6 (22-184)||(28927526-28927688)
chr6 (19-197)||(29834495-29834673)
chr6 (19-197)||(29865929-29866107)
chr6 (127-200)||(24264401-24264474)
chr6 (117-182)||(24941495-24941560)
chr6 (19-200)||(29211619-29211800)
chr6 (146-197)||(24730135-24730186)
chr6 (146-197)||(24890914-24890965)
chr6 (117-179)||(24933965-24934027)
chr6 (127-197)||(29881715-29881785)
chr6 (127-197)||(29908871-29908941)
chr6 (127-200)||(29084295-29084368)
chr6 (127-200)||(29098620-29098693)
chr6 (127-200)||(29115538-29115611)
chr6 (19-80)||(29893950-29894011)
chr6 (22-200)||(29366965-29367143)
chr6 (146-197)||(29928553-29928604)
chr6 (19-79)||(24264293-24264353)
chr6 (19-79)||(29886695-29886755)
chr6 (19-79)||(29928671-29928731)
[»] chr8 (1 HSPs)
chr8 (14-209)||(13905134-13905329)
[»] scaffold1840 (1 HSPs)
scaffold1840 (14-209)||(677-872)
[»] chr7 (1 HSPs)
chr7 (15-202)||(3642312-3642499)
[»] scaffold0177 (1 HSPs)
scaffold0177 (37-198)||(26633-26794)
[»] scaffold0572 (1 HSPs)
scaffold0572 (14-209)||(2499-2694)
[»] scaffold0654 (1 HSPs)
scaffold0654 (33-205)||(1775-1947)
[»] scaffold0086 (1 HSPs)
scaffold0086 (33-181)||(31859-32007)
[»] scaffold0051 (2 HSPs)
scaffold0051 (37-202)||(51063-51228)
scaffold0051 (37-208)||(43846-44017)
[»] chr1 (1 HSPs)
chr1 (14-107)||(41315639-41315732)
[»] scaffold0652 (1 HSPs)
scaffold0652 (37-202)||(5945-6110)
[»] scaffold0429 (1 HSPs)
scaffold0429 (37-208)||(5465-5636)
[»] scaffold0054 (1 HSPs)
scaffold0054 (127-200)||(54350-54423)
[»] scaffold0237 (2 HSPs)
scaffold0237 (146-197)||(21623-21674)
scaffold0237 (19-79)||(21741-21801)
[»] chr2 (1 HSPs)
chr2 (19-80)||(15063417-15063478)


Alignment Details
Target: scaffold0019 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 33 - 205
Target Start/End: Original strand, 126678 - 126850
Alignment:
Q  33 tttatctttacacaaactatcgattattgtgctgtacattaccacattggtgttgaccaatttcccttcaatttgtttcaacatctgcaaggcggctctt 132  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||| |||||||| ||||||    
T  126678 tttatctttacacaaactatcgattattgtgctgtacattaccacattggtgttgaccaatttcccttcaatctttctcaacatttgcaaggctgctctt 126777  T
Q  133 gtttctcccattgtacacaatccattgatcaaggtcccatagctaacttggtccaagtgaaatccaagtgaaa 205  Q
    ||||| || ||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  126778 gtttcccctattttacacaagccattgatcaaggtcccatagctaacttggtccaagtggaatccaagtgaaa 126850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 116; Significance: 4e-59; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 14 - 209
Target Start/End: Complemental strand, 16350513 - 16350318
Alignment:
Q  14 cataggcatcatttacaagtttatctttacacaaactatcgattattgtgctgtacattaccacattggtgttgaccaatttcccttcaatttgtttcaa 113  Q
    ||||||||||| |||| ||||||||||||||||||| ||| || |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  16350513 cataggcatcagttactagtttatctttacacaaaccatcaatgattgtgctatacattaccacattggtgttgaccaatttcccttcaatttgtctcaa 16350414  T
Q  114 catctgcaaggcggctcttgtttctcccattgtacacaatccattgatcaaggtcccatagctaacttggtccaagtgaaatccaagtgaaagcac 209  Q
    ||  || |||||||||||||||| ||||||| |||||||||||||||||||| | |||||  |||| || | ||||||||||||||||| ||||||    
T  16350413 cacttgtaaggcggctcttgtttgtcccattttacacaatccattgatcaagataccataagtaacatgattcaagtgaaatccaagtgcaagcac 16350318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 14 - 209
Target Start/End: Complemental strand, 11990775 - 11990580
Alignment:
Q  14 cataggcatcatttacaagtttatctttacacaaactatcgattattgtgctgtacattaccacattggtgttgaccaatttcccttcaatttgtttcaa 113  Q
    ||||||||||| |||| | ||||| ||||||||||||||| || |||||| | ||||||||||||||| | |||||||||||||| ||||| | | |||     
T  11990775 cataggcatcaattaccaatttatgtttacacaaactatcaatgattgtgttatacattaccacattgatcttgaccaatttcccatcaatctttctcag 11990676  T
Q  114 catctgcaaggcggctcttgtttctcccattgtacacaatccattgatcaaggtcccatagctaacttggtccaagtgaaatccaagtgaaagcac 209  Q
    ||| |||||||| | ||||||||| || ||| ||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||    
T  11990675 catttgcaaggctgttcttgtttcccctattttacacaagccattgatcaaggtcccatagctaaattgatccaagtgaaatccaagtgcaagcac 11990580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 9628753 - 9628809
Alignment:
Q  20 catcatttacaagtttatctttacacaaactatcgattattgtgctgtacattacca 76  Q
    |||||||||| ||||||||||||||||||||||| |||||||| || ||||||||||    
T  9628753 catcatttacgagtttatctttacacaaactatcaattattgtcctatacattacca 9628809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 90
Target Start/End: Original strand, 9648274 - 9648350
Alignment:
Q  14 cataggcatcatttacaagtttatctttacacaaactatcgattattgtgctgtacattaccacattggtgttgacc 90  Q
    |||| ||||||||||||||||||||| ||||||||||||| || | |||||| ||||||||||| |  |||||||||    
T  9648274 catatgcatcatttacaagtttatctctacacaaactatcaatgagtgtgctatacattaccacgtcagtgttgacc 9648350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 9657268 - 9657339
Alignment:
Q  19 gcatcatttacaagtttatctttacacaaactatcgattattgtgctgtacattaccacattggtgttgacc 90  Q
    ||||||||||||| ||||||| ||||| ||| ||| || |||||||| ||||||||||| |  |||||||||    
T  9657268 gcatcatttacaactttatctctacacgaaccatcaatgattgtgctatacattaccacgtcagtgttgacc 9657339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 202
Target Start/End: Original strand, 24219845 - 24219959
Alignment:
Q  88 accaatttcccttcaatttgtttcaacatctgcaaggcggctcttgtttctcccattgtacacaatccattgatcaaggtcccatagctaacttggtcca 187  Q
    ||||||||||| |||||| || ||| ||| |  ||||| ||| |||||| ||| | | |||| || || |||||||||||||  || |||||||||| ||    
T  24219845 accaatttcccatcaattcgtctcagcatttctaaggcagcttttgtttgtccaactttacataacccgttgatcaaggtcctgtaactaacttggttca 24219944  T
Q  188 agtgaaatccaagtg 202  Q
    | |||||||||||||    
T  24219945 actgaaatccaagtg 24219959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0308 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 37 - 205
Target Start/End: Complemental strand, 8435 - 8267
Alignment:
Q  37 tctttacacaaactatcgattattgtgctgtacattaccacattggtgttgaccaatttcccttcaatttgtttcaacatctgcaaggcggctcttgttt 136  Q
    |||||||||||||||||||| |||||| | ||||||||||||| |||||||||||||||||||||||| | | ||||||| |||||||| ||||||||||    
T  8435 tctttacacaaactatcgatgattgtgttatacattaccacatcggtgttgaccaatttcccttcaatctttctcaacatttgcaaggctgctcttgttt 8336  T
Q  137 ctcccattgtacacaatccattgatcaaggtcccatagctaacttggtccaagtgaaatccaagtgaaa 205  Q
    | || ||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  8335 cccctattttacacaagccattgatcaaggtcccatagctaacttggtccaagtggaatccaagtgaaa 8267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 112; Significance: 9e-57; HSPs: 4)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 14 - 209
Target Start/End: Complemental strand, 136837 - 136642
Alignment:
Q  14 cataggcatcatttacaagtttatctttacacaaactatcgattattgtgctgtacattaccacattggtgttgaccaatttcccttcaatttgtttcaa 113  Q
    |||| |||||| |||||||||||||||||||||||||||| || ||| |||| ||||||||||||| |||||||||||||||||| ||||| | | ||||    
T  136837 cataagcatcaattacaagtttatctttacacaaactatcaataattatgctatacattaccacatcggtgttgaccaatttcccatcaatctttctcaa 136738  T
Q  114 catctgcaaggcggctcttgtttctcccattgtacacaatccattgatcaaggtcccatagctaacttggtccaagtgaaatccaagtgaaagcac 209  Q
    ||  |||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||  ||||||||| ||| ||||||||||||| ||||||    
T  136737 cacttgcaaggcagctcttgtttctcccattttacacaatccattgatcaaggtcgcataagtaacttggttcaattgaaatccaagtgcaagcac 136642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 37 - 201
Target Start/End: Original strand, 122030 - 122194
Alignment:
Q  37 tctttacacaaactatcgattattgtgctgtacattaccacattggtgttgaccaatttcccttcaatttgtttcaacatctgcaaggcggctcttgttt 136  Q
    ||||||||||| |||||||| ||| |  | |||||||||||||||||||||||||| ||||||||||||||| ||||||| | |||||| ||||||||||    
T  122030 tctttacacaagctatcgatgattatattatacattaccacattggtgttgaccaacttcccttcaatttgtctcaacattttcaaggccgctcttgttt 122129  T
Q  137 ctcccattgtacacaatccattgatcaaggtcccatagctaacttggtccaagtgaaatccaagt 201  Q
    |||| ||| ||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  122130 ctccgattttacacaagccactgatcaaggccccatagctaacttggtccaagtgaaatccaagt 122194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 14 - 209
Target Start/End: Original strand, 105274 - 105469
Alignment:
Q  14 cataggcatcatttacaagtttatctttacacaaactatcgattattgtgctgtacattaccacattggtgttgaccaatttcccttcaatttgtttcaa 113  Q
    |||| |||||| |||||||||||||||| ||||||||||| || | |||| | |||||||||||||||||||||||||||||| |||||||| || | ||    
T  105274 catatgcatcacttacaagtttatctttgcacaaactatcaatgactgtgttatacattaccacattggtgttgaccaatttcgcttcaattcgtcttaa 105373  T
Q  114 catctgcaaggcggctcttgtttctcccattgtacacaatccattgatcaaggtcccatagctaacttggtccaagtgaaatccaagtgaaagcac 209  Q
    ||  || |||||  || |||||| ||||||| ||||||| ||||||||||| || |||||  ||||||| || |||||||||||||||| ||||||    
T  105374 cacttgtaaggcttcttttgtttttcccattttacacaagccattgatcaaagtaccataagtaacttgatctaagtgaaatccaagtgcaagcac 105469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 14 - 149
Target Start/End: Complemental strand, 139761 - 139626
Alignment:
Q  14 cataggcatcatttacaagtttatctttacacaaactatcgattattgtgctgtacattaccacattggtgttgaccaatttcccttcaatttgtttcaa 113  Q
    |||||||||||  ||| | ||||||||||||||||||||| || |||||  | | |||||||||||| ||||||| ||||||||||||||| | | ||||    
T  139761 cataggcatcaagtaccaatttatctttacacaaactatcaatgattgtattatgcattaccacattagtgttgatcaatttcccttcaatctttctcaa 139662  T
Q  114 catctgcaaggcggctcttgtttctcccattgtaca 149  Q
    ||| |||||||| |||||||||||||||||| ||||    
T  139661 catttgcaaggcagctcttgtttctcccattttaca 139626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 108; Significance: 2e-54; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 14 - 209
Target Start/End: Original strand, 16702554 - 16702749
Alignment:
Q  14 cataggcatcatttacaagtttatctttacacaaactatcgattattgtgctgtacattaccacattggtgttgaccaatttcccttcaatttgtttcaa 113  Q
    ||||||||||| |||| ||||||||||||||||||| ||| || | ||| || |||||||||||||||||||||||||||||||||||||||||| ||||    
T  16702554 cataggcatcaattactagtttatctttacacaaaccatcaatgactgtactatacattaccacattggtgttgaccaatttcccttcaatttgtctcaa 16702653  T
Q  114 catctgcaaggcggctcttgtttctcccattgtacacaatccattgatcaaggtcccatagctaacttggtccaagtgaaatccaagtgaaagcac 209  Q
    ||  || |||||||||||||||| ||||||| |||||||||||||||||||| | |||||  |||| || | ||||||||||||||||| ||||||    
T  16702654 cacttgtaaggcggctcttgtttgtcccattttacacaatccattgatcaagataccataagtaacatgattcaagtgaaatccaagtgcaagcac 16702749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 14 - 209
Target Start/End: Original strand, 15715523 - 15715718
Alignment:
Q  14 cataggcatcatttacaagtttatctttacacaaactatcgattattgtgctgtacattaccacattggtgttgaccaatttcccttcaatttgtttcaa 113  Q
    |||||||||||||||||  ||||| |||||||||||||||||| |||| | | ||||||||||||| |||||||||||||||||||||||| | | ||||    
T  15715523 cataggcatcatttacatctttatttttacacaaactatcgatgattgcggtatacattaccacatcggtgttgaccaatttcccttcaatctttctcaa 15715622  T
Q  114 catctgcaaggcggctcttgtttctcccattgtacacaatccattgatcaaggtcccatagctaacttggtccaagtgaaatccaagtgaaagcac 209  Q
    ||| |||||||| ||||||||||| || ||| ||||||| ||||  || ||||||||||||||||||||||||||||| |||||| ||| ||||||    
T  15715623 catttgcaaggctgctcttgtttcccctattttacacaacccataaattaaggtcccatagctaacttggtccaagtggaatccatgtgcaagcac 15715718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 14 - 209
Target Start/End: Original strand, 15727704 - 15727899
Alignment:
Q  14 cataggcatcatttacaagtttatctttacacaaactatcgattattgtgctgtacattaccacattggtgttgaccaatttcccttcaatttgtttcaa 113  Q
    ||||||||||| |||||| ||||| ||||||||||||||| || || ||  ||| ||||||||||| ||  | ||||||| |||||||||| | | ||||    
T  15727704 cataggcatcagttacaaatttatgtttacacaaactatcaatgatcgtattgtgcattaccacatcggactcgaccaatctcccttcaatctttctcaa 15727803  T
Q  114 catctgcaaggcggctcttgtttctcccattgtacacaatccattgatcaaggtcccatagctaacttggtccaagtgaaatccaagtgaaagcac 209  Q
    |||  ||||||| ||| ||||||| || ||| ||||||| |||||||||||||| |||||  |||| || ||||| ||||||||||||| ||||||    
T  15727804 cattagcaaggcagcttttgtttccccaattttacacaacccattgatcaaggtaccataagtaacatgatccaattgaaatccaagtgcaagcac 15727899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 194
Target Start/End: Complemental strand, 24711596 - 24711421
Alignment:
Q  19 gcatcatttacaagtttatctttacacaaactatcgattattgtgctgtacattaccacattggtgttga-ccaatttcccttcaatttgtttcaacatc 117  Q
    |||||||| |||||||||| ||| || |||||||| || |||||| |||||||||||||||| | ||||| |||||||||| |  |   || ||||||      
T  24711596 gcatcattaacaagtttatatttgcataaactatcaataattgtggtgtacattaccacattag-gttgaaccaatttcccattgacccgtctcaacaat 24711498  T
Q  118 tgcaaggcggctcttgtttctcccattgtacacaatccattgatcaaggtcccatagctaacttggtccaagtgaaa 194  Q
    | |   || ||||||||| | || | | ||||||| ||||| ||||||||||||||||||||||||||||| |||||    
T  24711497 tcctgcgcagctcttgttgcaccaactttacacaacccattaatcaaggtcccatagctaacttggtccaaatgaaa 24711421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 22 - 184
Target Start/End: Original strand, 28927526 - 28927688
Alignment:
Q  22 tcatttacaagtttatctttacacaaactatcgattattgtgctgtacattaccacattggtgttga-ccaatttcccttcaatttgtttcaacatctgc 120  Q
    ||||| ||||||||||||||||||| |||||| || ||  |  |||||||||||||||  | ||||| |||||||||| |||| | || ||| ||  |||    
T  28927526 tcattaacaagtttatctttacacatactatcaataatcatagtgtacattaccacatcag-gttgaaccaatttcccatcaactcgtctcagcaattgc 28927624  T
Q  121 aaggcggctcttgtttctcccattgtacacaatccattgatcaaggtcccatagctaacttggt 184  Q
    || || |||||||||| ||| | | |||| ||||| ||||||||||||||||| ||||| ||||    
T  28927625 aaagctgctcttgtttgtccaactttacataatccgttgatcaaggtcccataactaacatggt 28927688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 197
Target Start/End: Complemental strand, 29834673 - 29834495
Alignment:
Q  19 gcatcatttacaagtttatctttacacaaactatcgattattgtgctgtacattaccacattggtgttgaccaatttcccttcaatttgtttcaacatct 118  Q
    |||||||| ||| ||||||||||||||| || |||||| || ||  |||||||||||||| | |  |  ||||||||||| || |   || ||| ||  |    
T  29834673 gcatcattaacatgtttatctttacacataccatcgataatggtattgtacattaccacactaggctgaaccaatttcccatctacacgtctcagcaatt 29834574  T
Q  119 gcaaggcggctcttgtttctcccattgtacacaatccattgatcaaggtcccatagctaacttggtccaagtgaaatcc 197  Q
    |||  || ||||||||||| || | | ||||||| ||||| |||||||| ||||| |||||||||||||| ||||||||    
T  29834573 gcagagctgctcttgtttcaccaactttacacaagccattaatcaaggttccataactaacttggtccaaatgaaatcc 29834495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 197
Target Start/End: Complemental strand, 29866107 - 29865929
Alignment:
Q  19 gcatcatttacaagtttatctttacacaaactatcgattattgtgctgtacattaccacattggtgttgaccaatttcccttcaatttgtttcaacatct 118  Q
    |||||||| ||| ||||||||||||||| || |||||| || ||  |||||||||||||| | |  |  ||||||||||| || |   || ||| ||  |    
T  29866107 gcatcattaacatgtttatctttacacataccatcgataatggtattgtacattaccacactaggctgaaccaatttcccatctacacgtctcagcaatt 29866008  T
Q  119 gcaaggcggctcttgtttctcccattgtacacaatccattgatcaaggtcccatagctaacttggtccaagtgaaatcc 197  Q
    |||  || ||||||||||| || | | ||||||| ||||| |||||||| ||||| |||||||||||||| ||||||||    
T  29866007 gcagagctgctcttgtttcaccaactttacacaagccattaatcaaggttccataactaacttggtccaaatgaaatcc 29865929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 200
Target Start/End: Original strand, 24264401 - 24264474
Alignment:
Q  127 gctcttgtttctcccattgtacacaatccattgatcaaggtcccatagctaacttggtccaagtgaaatccaag 200  Q
    |||||||||||||| |   ||||||| ||||| |||||||| ||||| |||||||||||||| |||||||||||    
T  24264401 gctcttgtttctcctaccttacacaagccattaatcaaggttccataactaacttggtccaaatgaaatccaag 24264474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 182
Target Start/End: Complemental strand, 24941560 - 24941495
Alignment:
Q  117 ctgcaaggcggctcttgtttctcccattgtacacaatccattgatcaaggtcccatagctaacttg 182  Q
    ||||| ||| ||||||||||||||  || |||| ||||||||||||||||||||||| ||||||||    
T  24941560 ctgcagggcagctcttgtttctcctgttttacataatccattgatcaaggtcccataactaacttg 24941495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 29211619 - 29211800
Alignment:
Q  19 gcatcatttacaagtttatctttacacaaactatcgattattgtgctgtacattaccacattggtgttgaccaatttcccttcaatttgtttcaacatct 118  Q
    |||||||| ||| ||||||||||||||| || |||||| || || ||||||||||||||||| |  |  |||||||| || |||| | || | | ||  |    
T  29211619 gcatcattaacatgtttatctttacacataccatcgataatggtactgtacattaccacattaggctgaaccaatttaccatcaactcgtctgagcaagt 29211718  T
Q  119 gcaaggcggctcttgtttctcccattgtacacaatccattgatcaaggtcccatagctaacttggtccaagtgaaatccaag 200  Q
      | ||| |||||||||||||| |   |||| || |||| |||||||||||||||||||| |||||  || |||||||||||    
T  29211719 caagggctgctcttgtttctcctaccttacataagccatcgatcaaggtcccatagctaatttggttgaattgaaatccaag 29211800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 197
Target Start/End: Complemental strand, 24730186 - 24730135
Alignment:
Q  146 tacacaatccattgatcaaggtcccatagctaacttggtccaagtgaaatcc 197  Q
    |||| ||||| || ||||||||||||||||||||||||||||| ||||||||    
T  24730186 tacataatccgttaatcaaggtcccatagctaacttggtccaaatgaaatcc 24730135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 197
Target Start/End: Original strand, 24890914 - 24890965
Alignment:
Q  146 tacacaatccattgatcaaggtcccatagctaacttggtccaagtgaaatcc 197  Q
    |||| ||||| || ||||||||||||||||||||||||||||| ||||||||    
T  24890914 tacataatccgttaatcaaggtcccatagctaacttggtccaaatgaaatcc 24890965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 117 - 179
Target Start/End: Complemental strand, 24934027 - 24933965
Alignment:
Q  117 ctgcaaggcggctcttgtttctcccattgtacacaatccattgatcaaggtcccatagctaac 179  Q
    ||||| ||| ||||||||||||||  || |||| ||||||||||||||||||||||| |||||    
T  24934027 ctgcagggcagctcttgtttctcctgttttacataatccattgatcaaggtcccataactaac 24933965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 127 - 197
Target Start/End: Complemental strand, 29881785 - 29881715
Alignment:
Q  127 gctcttgtttctcccattgtacacaatccattgatcaaggtcccatagctaacttggtccaagtgaaatcc 197  Q
    ||||||||||| || | | ||||||| ||||| |||||||| ||||| |||||||||||||| ||||||||    
T  29881785 gctcttgtttcaccaactttacacaagccattaatcaaggttccataactaacttggtccaaatgaaatcc 29881715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 127 - 197
Target Start/End: Complemental strand, 29908941 - 29908871
Alignment:
Q  127 gctcttgtttctcccattgtacacaatccattgatcaaggtcccatagctaacttggtccaagtgaaatcc 197  Q
    ||||||||||| || | | ||||||| ||||| |||||||| ||||| |||||||||||||| ||||||||    
T  29908941 gctcttgtttcaccaactttacacaagccattaatcaaggttccataactaacttggtccaaatgaaatcc 29908871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 200
Target Start/End: Complemental strand, 29084368 - 29084295
Alignment:
Q  127 gctcttgtttctcccattgtacacaatccattgatcaaggtcccatagctaacttggtccaagtgaaatccaag 200  Q
    |||||||||||||| |   |||| || |||| ||||||||| ||||| |||||||||||||| |||||||||||    
T  29084368 gctcttgtttctcctaccttacataagccatggatcaaggttccataactaacttggtccaaatgaaatccaag 29084295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 200
Target Start/End: Complemental strand, 29098693 - 29098620
Alignment:
Q  127 gctcttgtttctcccattgtacacaatccattgatcaaggtcccatagctaacttggtccaagtgaaatccaag 200  Q
    |||||||||||||| |   |||| || |||| |||||||||||||||||||| |||||| || |||||||||||    
T  29098693 gctcttgtttctcctaccttacataagccatggatcaaggtcccatagctaatttggtcgaaatgaaatccaag 29098620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 200
Target Start/End: Complemental strand, 29115611 - 29115538
Alignment:
Q  127 gctcttgtttctcccattgtacacaatccattgatcaaggtcccatagctaacttggtccaagtgaaatccaag 200  Q
    |||||||||||||| |   |||| || |||| |||||||||||||||||||| |||||| || |||||||||||    
T  29115611 gctcttgtttctcctaccttacataagccatggatcaaggtcccatagctaatttggtcgaaatgaaatccaag 29115538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 29894011 - 29893950
Alignment:
Q  19 gcatcatttacaagtttatctttacacaaactatcgattattgtgctgtacattaccacatt 80  Q
    |||||||| ||| ||||||||||||||| || |||||| || || |||||||||||||||||    
T  29894011 gcatcattaacatgtttatctttacacataccatcgataatggtactgtacattaccacatt 29893950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 200
Target Start/End: Original strand, 29366965 - 29367143
Alignment:
Q  22 tcatttacaagtttatctttacacaaactatcgattattgtgctgtacattaccacattggtgttga-ccaatttcccttcaatttgtttcaacatctgc 120  Q
    ||||| ||||| ||| |||| ||||  ||||| || || ||| |||||||||||||||| | ||||| ||||||| || |||| | || ||| ||  |||    
T  29366965 tcattaacaagcttaactttgcacatgctatcaataatggtgttgtacattaccacattag-gttgaaccaatttaccatcaactcgtctcagcaattgc 29367063  T
Q  121 aaggcggctcttgtttctcccattgtacacaatccattgatcaaggtcccatagctaacttggtccaagtgaaatccaag 200  Q
    || || || ||||||| ||| | | |||| || ||||||||||| |||||||| ||||||| || ||| |||||||||||    
T  29367064 aaagctgcacttgtttgtccaactttacataacccattgatcaaagtcccataactaactttgttcaaatgaaatccaag 29367143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 197
Target Start/End: Complemental strand, 29928604 - 29928553
Alignment:
Q  146 tacacaatccattgatcaaggtcccatagctaacttggtccaagtgaaatcc 197  Q
    ||||||| ||||| |||||||| ||||| |||||||||||||| ||||||||    
T  29928604 tacacaagccattaatcaaggttccataactaacttggtccaaatgaaatcc 29928553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 24264293 - 24264353
Alignment:
Q  19 gcatcatttacaagtttatctttacacaaactatcgattattgtgctgtacattaccacat 79  Q
    |||||||| |||  |||||||||||||| |||||| || || || ||||||||||||||||    
T  24264293 gcatcattaacatttttatctttacacatactatcaataatcgtactgtacattaccacat 24264353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 29886755 - 29886695
Alignment:
Q  19 gcatcatttacaagtttatctttacacaaactatcgattattgtgctgtacattaccacat 79  Q
    |||||||| ||| ||||||||||||||| || |||||| || ||  |||||||||||||||    
T  29886755 gcatcattaacatgtttatctttacacataccatcgataatggtattgtacattaccacat 29886695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 29928731 - 29928671
Alignment:
Q  19 gcatcatttacaagtttatctttacacaaactatcgattattgtgctgtacattaccacat 79  Q
    |||||||| ||| ||||||||||||||| || |||||| || ||  |||||||||||||||    
T  29928731 gcatcattaacatgtttatctttacacataccatcgataatggtattgtacattaccacat 29928671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 14 - 209
Target Start/End: Original strand, 13905134 - 13905329
Alignment:
Q  14 cataggcatcatttacaagtttatctttacacaaactatcgattattgtgctgtacattaccacattggtgttgaccaatttcccttcaatttgtttcaa 113  Q
    |||||||||||||||||  ||||| |||||||||||||||||| |||| | | ||||||||||||| |||||||||||||||||||||||| | | ||||    
T  13905134 cataggcatcatttacatctttatttttacacaaactatcgatgattgcggtatacattaccacatcggtgttgaccaatttcccttcaatctttctcaa 13905233  T
Q  114 catctgcaaggcggctcttgtttctcccattgtacacaatccattgatcaaggtcccatagctaacttggtccaagtgaaatccaagtgaaagcac 209  Q
    ||| |||||||| ||||||||||| || ||| ||||||| ||||  || ||||||||||||||||||||||||||||| |||||| ||| ||||||    
T  13905234 catttgcaaggctgctcttgtttcccctattttacacaacccataaattaaggtcccatagctaacttggtccaagtggaatccatgtgcaagcac 13905329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1840 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: scaffold1840
Description:

Target: scaffold1840; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 14 - 209
Target Start/End: Complemental strand, 872 - 677
Alignment:
Q  14 cataggcatcatttacaagtttatctttacacaaactatcgattattgtgctgtacattaccacattggtgttgaccaatttcccttcaatttgtttcaa 113  Q
    |||| ||||||||||||||||||||||| ||||||| ||| || ||||| || |||||||| ||||||||  |||||||||||||||| || ||| ||||    
T  872 catatgcatcatttacaagtttatctttgcacaaaccatcaatgattgtactatacattacaacattggttctgaccaatttcccttcgatctgtctcaa 773  T
Q  114 catctgcaaggcggctcttgtttctcccattgtacacaatccattgatcaaggtcccatagctaacttggtccaagtgaaatccaagtgaaagcac 209  Q
    ||| ||||| || ||||||||||| || ||| ||||||||||||||||||||||||| |||||||||||||  || ||||||||||||| ||||||    
T  772 catttgcaacgccgctcttgtttcccctattttacacaatccattgatcaaggtcccgtagctaacttggttgaaatgaaatccaagtgcaagcac 677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 15 - 202
Target Start/End: Complemental strand, 3642499 - 3642312
Alignment:
Q  15 ataggcatcatttacaagtttatctttacacaaactatcgattattgtgctgtacattaccacattggtgttgaccaatttcccttcaatttgtttcaac 114  Q
    |||||||||| |||||  |||||||||||||||||||| ||| ||| |  | ||||||||||||| |||||| ||||||||||||||||| | |||||||    
T  3642499 ataggcatcacttacagctttatctttacacaaactattgatgattatattatacattaccacatcggtgttaaccaatttcccttcaatctttttcaac 3642400  T
Q  115 atctgcaaggcggctcttgtttctcccattgtacacaatccattgatcaaggtcccatagctaacttggtccaagtgaaatccaagtg 202  Q
    || |||||||||||||||||||| || ||| ||||||| ||||||||||||||||  || |||||||| |||||||||||||||||||    
T  3642399 atttgcaaggcggctcttgtttcaccgattttacacaacccattgatcaaggtcctgtaactaacttgatccaagtgaaatccaagtg 3642312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: scaffold0177
Description:

Target: scaffold0177; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 37 - 198
Target Start/End: Complemental strand, 26794 - 26633
Alignment:
Q  37 tctttacacaaactatcgattattgtgctgtacattaccacattggtgttgaccaatttcccttcaatttgtttcaacatctgcaaggcggctcttgttt 136  Q
    ||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||| ||||| | | ||||||  |||||||| ||||||||||    
T  26794 tctttacacaaactatcaatgattgtgctatacattaccacattggtgttgaccaatttcccatcaatctttctcaacacttgcaaggcagctcttgttt 26695  T
Q  137 ctcccattgtacacaatccattgatcaaggtcccatagctaacttggtccaagtgaaatcca 198  Q
    |||||||| |||||||||||||||||||| ||||||||||||||| || |||  ||||||||    
T  26694 ctcccattttacacaatccattgatcaagatcccatagctaacttcgttcaaacgaaatcca 26633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0572 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: scaffold0572
Description:

Target: scaffold0572; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 14 - 209
Target Start/End: Complemental strand, 2694 - 2499
Alignment:
Q  14 cataggcatcatttacaagtttatctttacacaaactatcgattattgtgctgtacattaccacattggtgttgaccaatttcccttcaatttgtttcaa 113  Q
    |||| ||||||||||||||||||||||| ||||||| ||| || ||||| || |||||||| |||| |||  |||||||||||||||| || ||| ||||    
T  2694 catatgcatcatttacaagtttatctttgcacaaaccatcaatgattgtactatacattacaacatcggtactgaccaatttcccttcgatctgtctcaa 2595  T
Q  114 catctgcaaggcggctcttgtttctcccattgtacacaatccattgatcaaggtcccatagctaacttggtccaagtgaaatccaagtgaaagcac 209  Q
    ||| ||||| || ||||||||||| || ||| ||||||| ||||||||||||||||| |||||||||||||  || ||||||||||||| ||||||    
T  2594 catttgcaacgccgctcttgtttcccctattttacacaagccattgatcaaggtcccgtagctaacttggttgaaatgaaatccaagtgcaagcac 2499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0654 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold0654
Description:

Target: scaffold0654; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 33 - 205
Target Start/End: Original strand, 1775 - 1947
Alignment:
Q  33 tttatctttacacaaactatcgattattgtgctgtacattaccacattggtgttgaccaatttcccttcaatttgtttcaacatctgcaaggcggctctt 132  Q
    ||||||||||||||||||||| || |||||||| |||||||||||||  ||||| ||||||||||| ||||| | | ||||||  || |||||  |  ||    
T  1775 tttatctttacacaaactatcaatgattgtgctatacattaccacatcagtgttaaccaatttcccatcaatctttctcaacacttgtaaggcttcggtt 1874  T
Q  133 gtttctcccattgtacacaatccattgatcaaggtcccatagctaacttggtccaagtgaaatccaagtgaaa 205  Q
    |||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  1875 gtttttcccattttacacaagccattgatcaaggtcccatagctaacttggtccaagtggaatccaagtgaaa 1947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 33 - 181
Target Start/End: Original strand, 31859 - 32007
Alignment:
Q  33 tttatctttacacaaactatcgattattgtgctgtacattaccacattggtgttgaccaatttcccttcaatttgtttcaacatctgcaaggcggctctt 132  Q
    ||||||||| |||| || ||| || | |||||| |||||||||||||||||||  |||||||||||||||||| ||||||||||||||||||||||||||    
T  31859 tttatctttgcacagacgatcaatgactgtgctatacattaccacattggtgtcaaccaatttcccttcaattcgtttcaacatctgcaaggcggctctt 31958  T
Q  133 gtttctcccattgtacacaatccattgatcaaggtcccatagctaactt 181  Q
    |||||||||||| ||||||| ||||| ||||| ||||| || |||||||    
T  31959 gtttctcccattttacacaacccattaatcaaagtcccgtaactaactt 32007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 37 - 202
Target Start/End: Original strand, 51063 - 51228
Alignment:
Q  37 tctttacacaaactatcgattattgtgctgtacattaccacattggtgttgaccaatttcccttcaatttgtttcaacatctgcaaggcggctcttgttt 136  Q
    ||||||||||||||||| || |||||||| |||||||||||||  ||||| ||||||||||| ||||| | | ||||||  || |||||  |  ||||||    
T  51063 tctttacacaaactatcaatgattgtgctatacattaccacatcagtgttaaccaatttcccatcaatctttctcaacacttgtaaggcttcagttgttt 51162  T
Q  137 ctcccattgtacacaatccattgatcaaggtcccatagctaacttggtccaagtgaaatccaagtg 202  Q
     ||||||| ||||||| ||||||||||| || |||||  ||||||||| |||| ||||||||||||    
T  51163 ttcccattttacacaagccattgatcaaagtaccataagtaacttggttcaagggaaatccaagtg 51228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 208
Target Start/End: Original strand, 43846 - 44017
Alignment:
Q  37 tctttacacaaactatcgattattgtgctgtacattaccacattggtgttgaccaatttcccttcaatttgtttcaacatctgcaaggcggctcttgttt 136  Q
    ||||||||||||||||| || |||||| ||| ||||| ||||||  |||| ||||||||||| ||||| | | | || |  || |||||  || ||||||    
T  43846 tctttacacaaactatcaataattgtgttgtgcattaacacattaatgttaaccaatttcccatcaatctttcttaaaaattgtaaggcttctgttgttt 43945  T
Q  137 ctcccattgtacacaatccattgatcaaggtcccatagctaacttggtccaagtgaaatccaagtgaaagca 208  Q
      |||||| ||||||| |||||||||||  |  ||||  ||||||||| |||||||||| || ||| |||||    
T  43946 tccccattttacacaagccattgatcaatatagcataagtaacttggttcaagtgaaatacatgtgcaagca 44017  T

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Target: chr1 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 14 - 107
Target Start/End: Complemental strand, 41315732 - 41315639
Alignment:
Q  14 cataggcatcatttacaagtttatctttacacaaactatcgattattgtgctgtacattaccacattggtgttgaccaatttcccttcaatttg 107  Q
    |||| |||||||||||||| |||||||||||||||| ||| ||||||||| | |||||||| |||| || ||||||||||||||||||||||||    
T  41315732 cataagcatcatttacaagcttatctttacacaaaccatcaattattgtgttatacattactacatcggagttgaccaatttcccttcaatttg 41315639  T

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Target: scaffold0652 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 37 - 202
Target Start/End: Original strand, 5945 - 6110
Alignment:
Q  37 tctttacacaaactatcgattattgtgctgtacattaccacattggtgttgaccaatttcccttcaatttgtttcaacatctgcaaggcggctcttgttt 136  Q
    ||||||||||||||||| || |||||| | |||||||| |||   ||||| ||||||||||| ||||| | | ||||||  || |||||  |  ||||||    
T  5945 tctttacacaaactatcaatgattgtgttatacattacaacaccagtgttaaccaatttcccatcaatctttctcaacacttgtaaggcttcggttgttt 6044  T
Q  137 ctcccattgtacacaatccattgatcaaggtcccatagctaacttggtccaagtgaaatccaagtg 202  Q
     ||||||| ||||||| ||||||||||| || |||||  ||| ||||| |||||||||||||||||    
T  6045 ttcccattttacacaagccattgatcaaagtaccataagtaatttggttcaagtgaaatccaagtg 6110  T

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Target: scaffold0429 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0429
Description:

Target: scaffold0429; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 37 - 208
Target Start/End: Complemental strand, 5636 - 5465
Alignment:
Q  37 tctttacacaaactatcgattattgtgctgtacattaccacattggtgttgaccaatttcccttcaatttgtttcaacatctgcaaggcggctcttgttt 136  Q
    ||||||||||||||||| || |||||| ||| ||||| ||||||  |||| ||||||||||| ||||| | | | ||||  || |||||  || ||||||    
T  5636 tctttacacaaactatcaataattgtgttgtgcattatcacattattgttaaccaatttcccatcaatctttcttaacaattgtaaggcttctgttgttt 5537  T
Q  137 ctcccattgtacacaatccattgatcaaggtcccatagctaacttggtccaagtgaaatccaagtgaaagca 208  Q
      |||||| ||||||| |||||||||||  |  ||||  ||||||||| |||||||||| || ||| |||||    
T  5536 tccccattttacacaagccattgatcaatttagcataagtaacttggttcaagtgaaattcatgtgcaagca 5465  T

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Target: scaffold0054 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 200
Target Start/End: Original strand, 54350 - 54423
Alignment:
Q  127 gctcttgtttctcccattgtacacaatccattgatcaaggtcccatagctaacttggtccaagtgaaatccaag 200  Q
    ||||||||||| || | | ||||||| ||||| |||||||| ||||| |||||||||||||| |||||||||||    
T  54350 gctcttgtttcaccaactttacacaagccattaatcaaggttccataactaacttggtccaaatgaaatccaag 54423  T

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Target: scaffold0237 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 197
Target Start/End: Complemental strand, 21674 - 21623
Alignment:
Q  146 tacacaatccattgatcaaggtcccatagctaacttggtccaagtgaaatcc 197  Q
    ||||||| ||||| |||||||| ||||| |||||||||||||| ||||||||    
T  21674 tacacaagccattaatcaaggttccataactaacttggtccaaatgaaatcc 21623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 21801 - 21741
Alignment:
Q  19 gcatcatttacaagtttatctttacacaaactatcgattattgtgctgtacattaccacat 79  Q
    |||||||| ||| ||||||||||||||| || |||||| || ||  |||||||||||||||    
T  21801 gcatcattaacatgtttatctttacacataccatcgataatggtattgtacattaccacat 21741  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 15063417 - 15063478
Alignment:
Q  19 gcatcatttacaagtttatctttacacaaactatcgattattgtgctgtacattaccacatt 80  Q
    ||||| || ||||||||||| ||||||| |||||| || || ||||| ||||||||||||||    
T  15063417 gcatcgttaacaagtttatccttacacatactatcaataatcgtgctatacattaccacatt 15063478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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