View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15705_high_38 (Length: 221)
Name: NF15705_high_38
Description: NF15705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15705_high_38 |
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Alignment Details
Target: chr8 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 16 - 203
Target Start/End: Complemental strand, 41160692 - 41160510
Alignment:
| Q |
16 |
atgaactatgtggaactcctgtgagaacaacaaatcagcttgttatcgttgaactcaaacttagagatcgtcgtttcaccattcgatactaacttaatta |
115 |
Q |
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| T |
41160692 |
atgaactatgtggaactcctgtgagaacaacaa-tcagcttgttatcgttgaactcaaacttagagatcgtcgtttcaccattcgatactaactta---- |
41160598 |
T |
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| Q |
116 |
ccttcatatctagttcttatcttacttctactaaagccgactgtgtaaaatgttagttttgtcagcgttcatgttgggtctatgtttt |
203 |
Q |
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| T |
41160597 |
ccttcatatctagttcttatcttacttctactaaagctgactgtgtaaaatgttagttttgtcagcgttcatgttgggtctatgtttt |
41160510 |
T |
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