View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15705_high_4 (Length: 615)
Name: NF15705_high_4
Description: NF15705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15705_high_4 |
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| [»] scaffold0065 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 554; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 17 - 602
Target Start/End: Original strand, 5169354 - 5169938
Alignment:
| Q |
17 |
atcatagatatctgcctccacttctattgcagaattctcgagggttgggtattcttaaaggtctctgacgctccgtcttaacttgtcgaccataacgcgt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5169354 |
atcatagatatctgcctccacttctattgcagaattcttgagggttgggtaatcttaaaggtctctgacgctccgtcttaacttgtcgaccataacgcgt |
5169453 |
T |
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| Q |
117 |
ctcttataacttaagaatttcttcctccttactagaatccaagtaactttacatcaatcacaatacatcgagtttaaactcactgaacttcacgagctgc |
216 |
Q |
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| T |
5169454 |
ctcttataacttaagaatttcttcctccttactagaatccaagtaactttacatcaatcacaatacatcgagtttaaactcaccgaacttcacgagct-c |
5169552 |
T |
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| Q |
217 |
gttcaggtatcctcagtcctattctgggtaatgtcctcctacttagatacttgcttctaaacttgttacttccgggtggcacttcaagtctaaaacaaat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5169553 |
gttcaggtatcctcagtcctattctgggtaatgtcctcctacttagatacatgcttctaaacttgttacttccgggtggcacttcaagtctaaaacaaat |
5169652 |
T |
|
| Q |
317 |
cctctagttacaatgttcatacttcggttacgcatactaatccaaccatactgtaaaatttcacaatcagcttagcttcattgtgacttcacggtcatca |
416 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5169653 |
cctctagttacaatgttcgtacttcggttacgcatactaatccaaccatactgtaaaatttcacaatcagcttagcttcattgtgacttcacggtcatca |
5169752 |
T |
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| Q |
417 |
agtcggaaactagtttgcgacatgctgcttaatctcatcttattactagtccttccttatccaaactcactttccctaagattccaaaagaatttagtcg |
516 |
Q |
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| T |
5169753 |
agtcggaaactagtttgcgacatgctgcttaatctcatcttattactagtccttccttatccaaacccactttccctaagattccaaaagaatttagtcg |
5169852 |
T |
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| Q |
517 |
tccgacttgcacgctaataacatgaaggttaacttcgttcctagatatcgtgctttcctttagacatacgccacctatttcttctc |
602 |
Q |
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| T |
5169853 |
tccgacttgcacgctaataacatgaaggttaacttcgttcctagatatcgtgctttcctttagacatacgccacctatttcttctc |
5169938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0065 (Bit Score: 73; Significance: 5e-33; HSPs: 1)
Name: scaffold0065
Description:
Target: scaffold0065; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 21 - 208
Target Start/End: Original strand, 63843 - 64031
Alignment:
| Q |
21 |
tagatatctgcctccacttctattgcagaattctcgagggttggg-tattcttaaaggtctctgacgctccgtcttaacttgtcgaccataacgcgtctc |
119 |
Q |
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||||||| ||| |||||||||| ||||||||||||| ||||| || || |||||| ||||| ||| | | |||||||| ||||| ||| |||| ||||| |
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| T |
63843 |
tagatatttgcttccacttctactgcagaattctcgggggttcggataatcttaagggtctatgatgttttgtcttaacatgtcgtccacaacgtgtctc |
63942 |
T |
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| Q |
120 |
ttataacttaagaatttcttcctccttactagaatccaagtaactttacatcaatcacaatacatcgagtttaaactcactgaacttca |
208 |
Q |
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| T |
63943 |
ctataacttgggaatttcttattccttactagaatccacgtaactttacaacagtcacgatacatcgagttttaactcaccgaacttca |
64031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 473 - 552
Target Start/End: Complemental strand, 20922148 - 20922069
Alignment:
| Q |
473 |
ttatccaaactcactttccctaagattccaaaagaatttagtcgtccgacttgcacgctaataacatgaaggttaacttc |
552 |
Q |
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|||||||||||||||| |||| | ||| | ||||||| |||| |||||||| || |||||||||| | ||||||||||| |
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| T |
20922148 |
ttatccaaactcacttctcctatggttctagaagaattaagtcttccgacttacatgctaataacaaggaggttaacttc |
20922069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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