View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15705_high_40 (Length: 211)
Name: NF15705_high_40
Description: NF15705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15705_high_40 |
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Alignment Details
Target: chr3 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 13793480 - 13793282
Alignment:
| Q |
1 |
tgtactcataaatataaacttcaaaattgactttaccaaaccgcgtc----ttttgcaccctttgatcgggggtccttgctacgtcactggactatggta |
96 |
Q |
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| T |
13793480 |
tgtactcataaatataaacttcaaaattgactttatcaaaccgcgtcataattttgcaccctttgatcggggatccttgctacgccactggactttggta |
13793381 |
T |
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| Q |
97 |
aatgccctggatcttgaaaaagctatgtgttatagataaagacaaggctctatatcaagaataatggcaactttgtgaaagtcaatgctatgtgttcat |
195 |
Q |
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| T |
13793380 |
aatgccctggatcttgaaaaagctctgtgttatagataaagacaaggctctatatcaagaataatggcaactttgtgaaagtcaatgctacgtgttcat |
13793282 |
T |
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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 181
Target Start/End: Original strand, 34494057 - 34494122
Alignment:
| Q |
116 |
aagctatgtgttatagataaagacaaggctctatatcaagaataatggcaactttgtgaaagtcaa |
181 |
Q |
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| T |
34494057 |
aagctatgtgttatagatatagacaaggctctatatcaagattaaggtcaactctatggaagtcaa |
34494122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 47
Target Start/End: Original strand, 16703001 - 16703044
Alignment:
| Q |
4 |
actcataaatataaacttcaaaattgactttaccaaaccgcgtc |
47 |
Q |
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| T |
16703001 |
actcataaatataaacttaaaaaatgactttaccaaaccgcgtc |
16703044 |
T |
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