View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15705_high_6 (Length: 561)
Name: NF15705_high_6
Description: NF15705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15705_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 532; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 1 - 548
Target Start/End: Complemental strand, 28733635 - 28733088
Alignment:
| Q |
1 |
tctctccaataatcttgccttcaactcagccacatcactatcttgcaaatgagattctttttccatcagtcgtgcccttaactcttcaacatcggcttta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28733635 |
tctctccaataatcttgccttcaactcagccacatcactatcttgcaaatgagattctttttccatcagtcgtgcccttaactcttcaacatcggcttta |
28733536 |
T |
|
| Q |
101 |
gattttttcaattcctaatataattcagcttgtctttgataagattccgatttcgtgttctccagtcgttcaaaggcacttctaatctgcaatgtgcttt |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28733535 |
gattttttcaattcctcatataattcagcttgtctttgataagattccgatttcgtgttctccagtcgttcaaaggcacttctaatctgcaatgtgcttt |
28733436 |
T |
|
| Q |
201 |
ggatatactcattctgatatcttacctcggcaccatccagtgcagattttaactgccctgcttcagctttaacggaaacaagctcggctttgagccggtt |
300 |
Q |
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| T |
28733435 |
ggatatactcattctgatatcttacctcggcaccatccagtgcagattttagctgccctgcttcagctttaactgaaacaagctcggctttgagccggtt |
28733336 |
T |
|
| Q |
301 |
tatctcctcgctttctacaacttccaatgcaggtaagcgaggagataaaccgactccactgaccaaatcatcctgaagtttgctcacaagttcctccagt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28733335 |
tatctcctcgctttctacaacttccaatgcaggtaagcgaggagataaaccgactccactgaccaaatcatcctgaagtttgctcacaagttcctccagt |
28733236 |
T |
|
| Q |
401 |
gagcttacttgagaccttgatttctctaactctaaagctaaggattggtaatcttctgacgcttttgcaccttctaatcggagcgtttccactgtcttat |
500 |
Q |
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| T |
28733235 |
gagcttacttgagaccttgatttctctaactctaaagctaaggattggtaatcttctgacgcttttgcaccttctaatcggagcgtttccactgtcttat |
28733136 |
T |
|
| Q |
501 |
ttgcagcttccaattgcatttgagttgtaccaagtgtttccaatgcct |
548 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
28733135 |
ttgcagcttccaattgcatttgagttgtaccaactgtttccaatgcct |
28733088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 6e-20; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 376 - 522
Target Start/End: Complemental strand, 22110127 - 22109981
Alignment:
| Q |
376 |
aagtttgctcacaagttcctccagtgagcttacttgagaccttgatttctctaactctaaagctaaggattggtaatcttctgacgcttttgcaccttct |
475 |
Q |
| |
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|||||| |||||||||||||||| || || ||||||| ||||||| ||| ||||| ||||||||||| | |||| |||| | |||||| ||| ||| |
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| T |
22110127 |
aagtttcctcacaagttcctccaaggactttgcttgagatcttgattgctccaactccaaagctaaggacttgtaagcttcagttgcttttagaccatct |
22110028 |
T |
|
| Q |
476 |
aatcggagcgtttccactgtcttatttgcagcttccaattgcatttg |
522 |
Q |
| |
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||||||| |||||||||||||||||| | | ||||||||||||||| |
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| T |
22110027 |
gatcggagtgtttccactgtcttatttaccgtttccaattgcatttg |
22109981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 376 - 522
Target Start/End: Original strand, 40584462 - 40584608
Alignment:
| Q |
376 |
aagtttgctcacaagttcctccagtgagcttacttgagaccttgatttctctaactctaaagctaaggattggtaatcttctgacgcttttgcaccttct |
475 |
Q |
| |
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|||||| |||||||||||||||| || || ||||||| ||||||| ||| ||||| ||||||||||| | |||| |||| | |||||| ||| ||| |
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| T |
40584462 |
aagtttcctcacaagttcctccaaggactttgcttgagatcttgattgctccaactccaaagctaaggacttgtaagcttcagttgcttttagaccatct |
40584561 |
T |
|
| Q |
476 |
aatcggagcgtttccactgtcttatttgcagcttccaattgcatttg |
522 |
Q |
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||||||| |||||||||||||||||| | | ||||||||||||||| |
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| T |
40584562 |
gatcggagtgtttccactgtcttatttaccgtttccaattgcatttg |
40584608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 176 - 309
Target Start/End: Complemental strand, 22110303 - 22110170
Alignment:
| Q |
176 |
gcacttctaatctgcaatgtgctttggatatactcattctgatatcttacctcggcaccatccagtgcagattttaactgccctgcttcagctttaacgg |
275 |
Q |
| |
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||||||||||||||||||||||| ||||| || || | || ||||||| ||||||| |||||| ||||||||| |||||| || |||||| ||| | | |
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| T |
22110303 |
gcacttctaatctgcaatgtgctctggatgtattcttcttggtatcttatctcggcaacatccaatgcagatttcaactgctctacttcagatttggcag |
22110204 |
T |
|
| Q |
276 |
aaacaagctcggctttgagccggtttatctcctc |
309 |
Q |
| |
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| | |||| |||||||||||| ||||||||||| |
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| T |
22110203 |
agataagcgcggctttgagcccatttatctcctc |
22110170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 176 - 309
Target Start/End: Original strand, 40584286 - 40584419
Alignment:
| Q |
176 |
gcacttctaatctgcaatgtgctttggatatactcattctgatatcttacctcggcaccatccagtgcagattttaactgccctgcttcagctttaacgg |
275 |
Q |
| |
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||||||||||||||||||||||| ||||| || || | || ||||||| ||||||| |||||| ||||||||| |||||| || |||||| ||| | | |
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| T |
40584286 |
gcacttctaatctgcaatgtgctctggatgtattcttcttggtatcttatctcggcaacatccaatgcagatttcaactgctctacttcagatttggcag |
40584385 |
T |
|
| Q |
276 |
aaacaagctcggctttgagccggtttatctcctc |
309 |
Q |
| |
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| | |||| |||||||||||| ||||||||||| |
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| T |
40584386 |
agataagcgcggctttgagcccatttatctcctc |
40584419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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