View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15705_high_9 (Length: 540)
Name: NF15705_high_9
Description: NF15705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15705_high_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 18 - 523
Target Start/End: Complemental strand, 6916899 - 6916394
Alignment:
| Q |
18 |
acaaaaatctaaactagctgaacaatgtatgatagaattgaaaatgagcatgtatgtgtcaactaaaatataagaaaacgcaaatatatgataaatttaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6916899 |
acaaaaatctaaactagctgaacaatgtatgatagaattgaaaatgagcatgtatgtgtcaactaaaatataagaaaacgcaaatatatgataaatttaa |
6916800 |
T |
|
| Q |
118 |
tattaaatcaagtttcccaataaaaacattggagtgacaccaaattgtacactatcacaattatagctactttttatttgctttcaaaattttgttgacc |
217 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6916799 |
tgttaaatcaagtttcccaataaaaacattggagtgacaccaaattgtacactatcacaattatagctactttttatttgctttcaaaattttgttgacc |
6916700 |
T |
|
| Q |
218 |
cnnnnnnntgaaccaaaactacaattcttttttctagataactacccccaataaatttaggaccgtgtacttgaaaggccatatcattcagctgccttat |
317 |
Q |
| |
|
| ||||||||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6916699 |
caaaaaaatgaaccaaaaccacaattcttttttccagataactacccccaaaaaatttaggaccgtgtacttgaaaggccatatcattcagctgccttat |
6916600 |
T |
|
| Q |
318 |
tgcccttgtatgtgtttatcaatcgggtctgtacatcatgagaaacacgtgaatgttccttatattccattgtgaattcaccctttccctgtgtcatcga |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6916599 |
tgcccttgtatgtgtttatcaatcgggtctgtacatcatgagaaacacgtgaatgttccttatattccattgtgaattcaccctttccctgtgtcatcga |
6916500 |
T |
|
| Q |
418 |
acgaatagccgtagaatacccaaacatattgttaagagggacatgagctgttatgacagaatcatcttcatcctgatcattgccaacaatcacacctttt |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
6916499 |
acgaatagccgtagaatacccaaacatattgttaagaggcacatgagctgtaatgacagaataatcttcgtcctgaacattgccaacaatcacacctttt |
6916400 |
T |
|
| Q |
518 |
ctcttg |
523 |
Q |
| |
|
|||||| |
|
|
| T |
6916399 |
ctcttg |
6916394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 3e-40; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 300 - 408
Target Start/End: Original strand, 15035941 - 15036049
Alignment:
| Q |
300 |
atcattcagctgccttattgcccttgtatgtgtttatcaatcgggtctgtacatcatgagaaacacgtgaatgttccttatattccattgtgaattcacc |
399 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
15035941 |
atcattcaggtgccttattgcccttgtatgcgtttaccaattgggtctgtacatcatgagaaacaggtgaatgttccttatattccattgtaaattcacc |
15036040 |
T |
|
| Q |
400 |
ctttccctg |
408 |
Q |
| |
|
||||||||| |
|
|
| T |
15036041 |
ctttccctg |
15036049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 405 - 459
Target Start/End: Original strand, 15036138 - 15036192
Alignment:
| Q |
405 |
cctgtgtcatcgaacgaatagccgtagaatacccaaacatattgttaagagggac |
459 |
Q |
| |
|
|||||||||||||||||| ||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
15036138 |
cctgtgtcatcgaacgaagagctgtagagtacccaaacatattgttaagagggac |
15036192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 458 - 520
Target Start/End: Original strand, 15037676 - 15037738
Alignment:
| Q |
458 |
acatgagctgttatgacagaatcatcttcatcctgatcattgccaacaatcacaccttttctc |
520 |
Q |
| |
|
||||||||| | |||||||| |||||| |||||||||||||||||||||||| ||| |||||| |
|
|
| T |
15037676 |
acatgagctataatgacagagtcatctccatcctgatcattgccaacaatcataccctttctc |
15037738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University