View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15705_low_13 (Length: 537)
Name: NF15705_low_13
Description: NF15705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15705_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 3 - 519
Target Start/End: Complemental strand, 32080973 - 32080457
Alignment:
| Q |
3 |
catgtcgaagaatatggaaatgattttaggtatcttcctttcggtgttggtagaagaagttgccccggaattattcttgccttgcctatccttggtatca |
102 |
Q |
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| T |
32080973 |
catgtcgaagctaatggaaatgattttaggtaccttcctttcggtgttggtagaagaagttgccccggaattattcttgccttgcctatccttggtatca |
32080874 |
T |
|
| Q |
103 |
ctattgggcgtctggttcagaatttcgagcttttgcctccacctggacaatcaaagattgacacttctgagaaaggaggacagtttagtctgcatatact |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32080873 |
ctattgggcgtctggttcagaatttcgagcttttgcctccacctggacaatcaaagattgacacttctgagaaaggaggacagtttagtctgcatatact |
32080774 |
T |
|
| Q |
203 |
caaacattcaaccattgttgctaagccaagatcattttaattagtcttcacattaatacccttttaatttgttttactttactttgtgtaatgcatttta |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32080773 |
caaacattcaaccattgttgctaagccaagatcattttaattagtcttcacactaatacccttttaatttgttttactttactttgtgtaatgcatttta |
32080674 |
T |
|
| Q |
303 |
ataattcaaaatgtgggaatgttattaaaatgtcttattagcctgcaatttggtaggtgaataatgttgttgttttgtgcttgtcctatgtataaagctt |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
32080673 |
ataattcaaaatgtgggaatgttattaaaatgtcttattagcctgcaattgggtaggtgaataatgttgttgttttgtgcttgtcccatgtataaagctt |
32080574 |
T |
|
| Q |
403 |
tgaactttgaagtaatggttttgagatgattttttaactgtacttgtccctaatattcttctatcaatagtgttcttgtaaatgtcaggtcaggtgccta |
502 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |
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| T |
32080573 |
tgaactttgaagtaatggttttgagatgattttttaactgtacttgtccctaatattcttctatcaatagtgttctggtaaatgtctggtcaggtgccta |
32080474 |
T |
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| Q |
503 |
acttttagaggatactc |
519 |
Q |
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||||||||||||||||| |
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| T |
32080473 |
acttttagaggatactc |
32080457 |
T |
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