View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15705_low_16 (Length: 491)
Name: NF15705_low_16
Description: NF15705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15705_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 14 - 477
Target Start/End: Complemental strand, 35234696 - 35234236
Alignment:
| Q |
14 |
caaaaacaactataaatacaatatctatagtttatatttgagtgaagactcgttttattctttgaaaaatatttgaagtccagtttagttccataggaaa |
113 |
Q |
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| T |
35234696 |
caaaaacaactataaatacaatatctatagtttatatttgagtgaagactcgttttattctttgaaaaatatttgaagtccagtttagttccataggaaa |
35234597 |
T |
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| Q |
114 |
ataagaatatattttaatatatataatccttgaaaaattaaaccgatacagcctaatctcttccttcttttacacagtaattggttgatgaaggcaaggt |
213 |
Q |
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| T |
35234596 |
ataagaatatattttaacata----atccttgaaaaattaaaccgatacagcctaatctcttccttcttttacacagtaattggttgatgaaggcaaggt |
35234501 |
T |
|
| Q |
214 |
aaagaaataaaatatagttcccttatacagatatatagtatagtaacagaaccatgtatgtacttgcaaattcataagcaacttttgtttacttccaaag |
313 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
35234500 |
aaggaaataaaatatagttcccttatacagatatatagtatagtaacagaaccatgtatgtacttgcaaattcataagcaacttttgcttacttccaaag |
35234401 |
T |
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| Q |
314 |
aaattctgtgaaatattggaggcgaattagggcattttataagttatcgcatgacataggatagtgtggcttgatttatgaagg-nnnnnnnccctgtgg |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
35234400 |
aaattctgtgaaatattggaggcgaattagggcattttataagttatcgcatgacataggatagtgtggcttgatttatgaaggaaaaaaaaacctgtgg |
35234301 |
T |
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| Q |
413 |
ccctaattgcatagacggtttcatttgactaatttatatatgactaataattgacgtagtataat |
477 |
Q |
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| T |
35234300 |
ccctaattgcatagacggtttcatttgactaatttatatatgactaataattgacgtagtataat |
35234236 |
T |
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