View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15705_low_19 (Length: 435)
Name: NF15705_low_19
Description: NF15705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15705_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 13793244 - 13792945
Alignment:
| Q |
1 |
caatgaaccatcactgatgtatgcaacgactctttgctaagaaaggatattttgtatgcaatgatggaaataaatggttgattcactgactgaaattaca |
100 |
Q |
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| T |
13793244 |
caatgaaccatcactgatgtatgcaacgactctttgctaagaaaggatattttgtatgcaatgatggaaataaatggttgattcactgactgaaattaca |
13793145 |
T |
|
| Q |
101 |
aataaatatatatcgacattcaatcatgcattcaaagacaaggttattctctagcaacaatcatcaagcctcgtctctatataaaagactaagttttgct |
200 |
Q |
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| T |
13793144 |
aataaatatatatcgacattcaatcatgcattcaaagacaaggttattctctagcaacaatcatcaagccccgtctctatataaaagaccaagttttgct |
13793045 |
T |
|
| Q |
201 |
tgaagaaggttacaacatgtatagatcaataactcctacaaaagacttaagccaattttgcctgatttctcctaatcatctccaattccggtgggttccg |
300 |
Q |
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| T |
13793044 |
tgaagaaggttacaacatgtatagatcaataactcctacaaaagacttaagccaattttgcctgatttctcctagtcatctccaattcgggtgggttccg |
13792945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 225 - 300
Target Start/End: Complemental strand, 18354933 - 18354858
Alignment:
| Q |
225 |
atcaataactcctacaaaagacttaagccaattttgcctgatttctcctaatcatctccaattccggtgggttccg |
300 |
Q |
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| T |
18354933 |
atcaataacccttacaatagacttaagtcaattttgcctaatttctcctggtcatctccaattctggtggtttccg |
18354858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 393
Target Start/End: Complemental strand, 13792895 - 13792853
Alignment:
| Q |
351 |
gggagacaccgcttaaattgaatcaggtttgtttgtggagatg |
393 |
Q |
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| T |
13792895 |
gggagacaccgcttgatttgaatcaggtttgtttgttgagatg |
13792853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 253 - 294
Target Start/End: Complemental strand, 24241502 - 24241461
Alignment:
| Q |
253 |
caattttgcctgatttctcctaatcatctccaattccggtgg |
294 |
Q |
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| T |
24241502 |
caattttgcgtgatttctcctagtcatctccaattccggtgg |
24241461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 45
Target Start/End: Complemental strand, 19584137 - 19584107
Alignment:
| Q |
15 |
tgatgtatgcaacgactctttgctaagaaag |
45 |
Q |
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| T |
19584137 |
tgatgtatgcaacgactctttgctaagaaag |
19584107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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