View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15705_low_21 (Length: 387)
Name: NF15705_low_21
Description: NF15705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15705_low_21 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 387
Target Start/End: Original strand, 6916035 - 6916417
Alignment:
| Q |
1 |
atatggacgagtgattggatatattgaaccacttcctgctgggtcaggaactaagtttgaatttgacaacatgcttgttggtcaagctattccatcgaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6916035 |
atatggacgagtgattggatatattgaaccacttcctgctgggtcaggaactaagtttgaatttgacaacatgcttgttggtcaagctattccatcgaat |
6916134 |
T |
|
| Q |
101 |
tttttccctgcaattgagaaaggttttaaagaagctgccaactctggtgccttgattggacatccagttgaaaatctccgagttgtcttgacagatggtg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
6916135 |
tttttccctgcaattgagaaaggttttaaagaagctgccaactctggtgccttgattggacatccagttcaaaatctccgagttgtcttgacagatggtg |
6916234 |
T |
|
| Q |
201 |
ctgctcatgatgttgattccagtgaacttgcctttaagttggcttctatctatgcttttagagagtgttacacagcttccagaccagttatattagaacc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6916235 |
ctgctcatgatgttgattccagtgaacttgcctttaagttggcttctatctatgcttttagagagtgttacacagcttccagaccagttatattagaacc |
6916334 |
T |
|
| Q |
301 |
tgttatgcttgttgaactgaaagtaccaacagaatttcagggagctgttgctggtgacctcaacaagagaaaaggtgtgattgttgg |
387 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6916335 |
tgttatgc----tgaactgaaagtaccaacagaatttcagggagctgttgctggtgacctcaacaagagaaaaggtgtgattgttgg |
6916417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 101; Significance: 6e-50; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 15038438 - 15038314
Alignment:
| Q |
20 |
tatattgaaccacttcctgctgggtcaggaactaagtttgaatttgacaacatgcttgttggtcaagctattccatcgaattttttccctgcaattgaga |
119 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
15038438 |
tatattgaaccactccctgctgggtcagaaactaagtttgaatttgaaaacatgcttgttggtcaagctattccatcaaattttttcgctgcaattgaga |
15038339 |
T |
|
| Q |
120 |
aaggttttaaagaagctgccaactc |
144 |
Q |
| |
|
||||||||| ||||||||||||||| |
|
|
| T |
15038338 |
aaggttttatagaagctgccaactc |
15038314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 150 - 262
Target Start/End: Complemental strand, 15038167 - 15038055
Alignment:
| Q |
150 |
ccttgattggacatccagttgaaaatctccgagttgtcttgacagatggtgctgctcatgatgttgattccagtgaacttgcctttaagttggcttctat |
249 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
15038167 |
ccttaattggacatcccgttgaaaatctccgagttgtcttgacagatggtgctgctcatgctgttgattccagtgagcttgcctttaagatggcttctat |
15038068 |
T |
|
| Q |
250 |
ctatgcttttaga |
262 |
Q |
| |
|
||||||||||||| |
|
|
| T |
15038067 |
ctatgcttttaga |
15038055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 264 - 367
Target Start/End: Complemental strand, 15037928 - 15037825
Alignment:
| Q |
264 |
agtgttacacagcttccagaccagttatattagaacctgttatgcttgttgaactgaaagtaccaacagaatttcagggagctgttgctggtgacctcaa |
363 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||| ||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
15037928 |
agtgttacactgcttccagaccaactatattagagcctgttatgcttgttgagctaaaagtaccaaatgaatttcagggagctgttgctggtgacctcaa |
15037829 |
T |
|
| Q |
364 |
caag |
367 |
Q |
| |
|
|||| |
|
|
| T |
15037828 |
caag |
15037825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University