View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15705_low_22 (Length: 386)
Name: NF15705_low_22
Description: NF15705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15705_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 11 - 372
Target Start/End: Complemental strand, 35552132 - 35551781
Alignment:
| Q |
11 |
agatgaaaataatttggtcaggagacttttgagttaagaaaggtgctggcaacctatttatgatgtgtacaacatgactaacaacatgtgctcaaaaaat |
110 |
Q |
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| T |
35552132 |
agatgaaaagaatttggtcaggagacttttgagttaagaaaggtgccggcaacctatttatgatgtgcacaacatg------------tgctaaaaaaat |
35552045 |
T |
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| Q |
111 |
gt--ggtaaatgagatttaaataatatgcttatgctttctctctactattccattttgatgaggggttgcaacacatgaagtttgatgtaaaatttcatt |
208 |
Q |
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| T |
35552044 |
atttggtaaatgagatttaaataatatgcttatgctttctctctactattccattttgatgaggggttgcaacacatgaagtttgatgtaaaatttcatt |
35551945 |
T |
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| Q |
209 |
ttccgagtaaaagtctttgctaagaaactcattgccattatcaaatctaatacacttgattttagtgttaaattttgtattaaccattttcacaattgat |
308 |
Q |
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| T |
35551944 |
ttccgagtaaaagtctttgctaagaaactcattgccattatcaaatctaatacgcttgattttagtgttaaattttgtattaaccattttcacaattgat |
35551845 |
T |
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| Q |
309 |
ttgataagattttatgcttctgatttaagcctcatgggataaatccatgtaaatatggatatat |
372 |
Q |
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| T |
35551844 |
ttgataagattttatgcttctgatttaagcctcatgggataaatccatgtaaatatggatatat |
35551781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 262
Target Start/End: Original strand, 7801007 - 7801125
Alignment:
| Q |
144 |
tttctctctactattccattttgatgaggggttgcaacacatgaagtttgatgtaaaatttcattttccgagtaaaagtctttgctaagaaactcattgc |
243 |
Q |
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| T |
7801007 |
tttctctctactattccattttgttgtggtgttccaacataccaagtttgatgtataattccatttttagagtttaaatcttttataagaagttcattac |
7801106 |
T |
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| Q |
244 |
cattatcaaatctaataca |
262 |
Q |
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| T |
7801107 |
cattatctgatctaataca |
7801125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 22 - 91
Target Start/End: Original strand, 7800858 - 7800927
Alignment:
| Q |
22 |
atttggtcaggagacttttgagttaagaaaggtgctggcaacctatttatgatgtgtacaacatgactaa |
91 |
Q |
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| T |
7800858 |
atttggtaaggagacttttgacctaaaaaagttgctggcaaactatttatgatgtggaaagcatgactaa |
7800927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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