View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15705_low_24 (Length: 352)
Name: NF15705_low_24
Description: NF15705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15705_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 16 - 331
Target Start/End: Complemental strand, 10306864 - 10306558
Alignment:
| Q |
16 |
tagggagagcgcggaggaggtcagtggtgctgaacgcggtaaggcaaactgcacagttggcggtggcggtagcggtggtggaaatggaggagaaatgaaa |
115 |
Q |
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| T |
10306864 |
tagggagagcgcggaggaggtcagtggtgctgaacgcggtaaggcaaactgcacagtcggcagtggcggtagcggtcgtggaaatggaggagaaatgaaa |
10306765 |
T |
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| Q |
116 |
cgtaggaagtgaatcgattgctcgttgtatttcccgcgccggtggaggtggttgcgacggcggtggtgttgaatcggaggtgaaatggaaaggaatcgga |
215 |
Q |
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| T |
10306764 |
cgtaggaagtgaatcgattgctcgttgtatttccggcgcaggttgaggtggttgcgacgacggtggtgttgaatcggaggtgaaatggaacggaatcgga |
10306665 |
T |
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| Q |
216 |
gggagtgagtcgatgtttagtgaagctggaggcgactcagtaacaatcatcgtcaatggtggcggtggttgtggtgatcgcggtggtgttgaatcggaga |
315 |
Q |
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| T |
10306664 |
gggagtgagtcgatgtttagtgaagctggaggcgactcagtaacaatcgtcgtcaatggtg---------gtggtgatcgcggtggtgttgaatcggaga |
10306574 |
T |
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| Q |
316 |
ggagacgtcggcgatt |
331 |
Q |
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|||||||||||||||| |
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| T |
10306573 |
ggagacgtcggcgatt |
10306558 |
T |
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