View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15705_low_25 (Length: 347)

Name: NF15705_low_25
Description: NF15705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15705_low_25
NF15705_low_25
[»] chr5 (12 HSPs)
chr5 (17-342)||(43141270-43141595)
chr5 (265-311)||(4391842-4391888)
chr5 (264-305)||(3456911-3456952)
chr5 (265-311)||(32891330-32891376)
chr5 (258-311)||(42148986-42149039)
chr5 (265-304)||(8692671-8692710)
chr5 (267-305)||(5481514-5481552)
chr5 (269-311)||(37093912-37093954)
chr5 (270-311)||(4392000-4392041)
chr5 (267-300)||(34286760-34286793)
chr5 (271-311)||(8692512-8692552)
chr5 (271-311)||(32891178-32891218)
[»] chr1 (18 HSPs)
chr1 (258-313)||(16255008-16255063)
chr1 (260-311)||(4624494-4624545)
chr1 (265-311)||(42480279-42480325)
chr1 (270-311)||(41647383-41647424)
chr1 (263-311)||(20809103-20809151)
chr1 (268-311)||(47550947-47550990)
chr1 (270-311)||(9098571-9098612)
chr1 (266-311)||(31032695-31032740)
chr1 (266-311)||(34476055-34476100)
chr1 (271-311)||(1270175-1270215)
chr1 (271-311)||(4194770-4194810)
chr1 (271-311)||(20808951-20808991)
chr1 (271-311)||(34475903-34475943)
chr1 (265-311)||(1270327-1270373)
chr1 (265-311)||(45010355-45010401)
chr1 (271-311)||(29095677-29095717)
chr1 (271-311)||(31032852-31032892)
chr1 (267-311)||(44714807-44714851)
[»] chr3 (10 HSPs)
chr3 (263-311)||(23642974-23643022)
chr3 (265-305)||(39145413-39145453)
chr3 (267-305)||(34624486-34624524)
chr3 (269-311)||(45166382-45166424)
chr3 (267-305)||(52546904-52546942)
chr3 (265-313)||(50612871-50612919)
chr3 (271-311)||(50613029-50613069)
chr3 (271-313)||(45166230-45166272)
chr3 (271-311)||(31788309-31788349)
chr3 (271-311)||(38176544-38176584)
[»] chr8 (13 HSPs)
chr8 (264-317)||(4824292-4824345)
chr8 (266-311)||(33889004-33889049)
chr8 (267-311)||(41322685-41322729)
chr8 (267-311)||(15561913-15561957)
chr8 (267-311)||(36473048-36473092)
chr8 (266-304)||(13357628-13357666)
chr8 (265-311)||(29314155-29314201)
chr8 (267-305)||(37919508-37919546)
chr8 (264-300)||(2001814-2001850)
chr8 (271-308)||(1196511-1196548)
chr8 (267-300)||(1416048-1416081)
chr8 (264-305)||(11653707-11653748)
chr8 (265-305)||(34392261-34392301)
[»] chr2 (14 HSPs)
chr2 (266-311)||(14940985-14941030)
chr2 (257-310)||(28429435-28429488)
chr2 (265-305)||(13686155-13686195)
chr2 (264-302)||(35676267-35676305)
chr2 (267-311)||(2752614-2752658)
chr2 (268-311)||(19899075-19899118)
chr2 (266-305)||(45093147-45093186)
chr2 (267-305)||(24413865-24413903)
chr2 (259-311)||(28716307-28716360)
chr2 (264-311)||(25415069-25415116)
chr2 (271-311)||(13685997-13686037)
chr2 (271-311)||(16058528-16058568)
chr2 (271-311)||(41464902-41464942)
chr2 (271-311)||(42263835-42263875)
[»] chr4 (16 HSPs)
chr4 (267-311)||(41633372-41633416)
chr4 (266-305)||(52726034-52726073)
chr4 (265-311)||(18375388-18375434)
chr4 (267-311)||(23348112-23348156)
chr4 (267-311)||(54358268-54358312)
chr4 (268-311)||(37674000-37674043)
chr4 (265-311)||(17847539-17847585)
chr4 (267-305)||(54021241-54021279)
chr4 (265-313)||(4512159-4512208)
chr4 (269-302)||(47282226-47282259)
chr4 (271-311)||(24683080-24683120)
chr4 (267-311)||(41497890-41497934)
chr4 (268-311)||(41878672-41878715)
chr4 (267-305)||(47838942-47838980)
chr4 (271-311)||(4098536-4098576)
chr4 (271-311)||(18375545-18375585)
[»] scaffold0339 (1 HSPs)
scaffold0339 (265-305)||(13404-13444)
[»] chr7 (4 HSPs)
chr7 (266-311)||(23991948-23991993)
chr7 (264-305)||(42195539-42195580)
chr7 (271-311)||(17611846-17611886)
chr7 (271-311)||(19479445-19479485)
[»] chr6 (3 HSPs)
chr6 (267-300)||(17366983-17367016)
chr6 (267-311)||(7646773-7646817)
chr6 (264-297)||(3835318-3835351)
[»] scaffold0002 (1 HSPs)
scaffold0002 (271-311)||(492670-492710)


Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 17 - 342
Target Start/End: Original strand, 43141270 - 43141595
Alignment:
Q  17 aatattatatcgttttagaaatgtctatccttataaaaaagaaaatcttatagacaaaaggattgtgaagtttgaatcctcaagttttgctcttcaattg 116  Q
    |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43141270 aatattatatcgttttagaaatgtctatccttataaaaaa-aaattcttatagacaaaaggattgtgaagtttgaatcctcaagttttgctcttcaattg 43141368  T
Q  117 agctcttgctagttgacggtaagattggtctttgagtcgtacacagggtattccaaaccaaaatatatataataacggtaagccataatagaagtattct 216  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43141369 agctcttgctagttgacggtaagattggtctttgagtcgtacactgggtattccaaaccaaaatatatataataacggtaagccataatagaagtattct 43141468  T
Q  217 aaaactagaaattgattctacgtgataatccaacatatctttttatgaaaggaaaatgctatttctctagaaaaatagcatcaagaattcttcaatat-a 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |    
T  43141469 aaaactagaaattgattctacgtgataatccaacatatctttttatgaaaggaaaatgttatttctctagaaaaatagcatcaagaattcttcaatataa 43141568  T
Q  316 aaatcagaattgaattttaaatttcat 342  Q
    |||||||||||||||||||||||||||    
T  43141569 aaatcagaattgaattttaaatttcat 43141595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 265 - 311
Target Start/End: Original strand, 4391842 - 4391888
Alignment:
Q  265 aaggaaaatgctatttctctagaaaaatagcatcaagaattcttcaa 311  Q
    ||||||||||| ||||||||||||||||||||||||||||| |||||    
T  4391842 aaggaaaatgcaatttctctagaaaaatagcatcaagaatttttcaa 4391888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 264 - 305
Target Start/End: Complemental strand, 3456952 - 3456911
Alignment:
Q  264 aaaggaaaatgctatttctctagaaaaatagcatcaagaatt 305  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  3456952 aaaggaaaatgctatttttctagaaaaatagcatcaagaatt 3456911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 311
Target Start/End: Complemental strand, 32891376 - 32891330
Alignment:
Q  265 aaggaaaatgctatttctctagaaaaatagcatcaagaattcttcaa 311  Q
    |||||||||||||||| ||||||||||||||||||| |||| |||||    
T  32891376 aaggaaaatgctatttatctagaaaaatagcatcaacaatttttcaa 32891330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 258 - 311
Target Start/End: Complemental strand, 42149039 - 42148986
Alignment:
Q  258 tttatgaaaggaaaatgctatttctctagaaaaatagcatcaagaattcttcaa 311  Q
    |||||||  |||||| ||||||||||||||||||||| |||||||||| |||||    
T  42149039 tttatgattggaaaacgctatttctctagaaaaatagtatcaagaatttttcaa 42148986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 265 - 304
Target Start/End: Complemental strand, 8692710 - 8692671
Alignment:
Q  265 aaggaaaatgctatttctctagaaaaatagcatcaagaat 304  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  8692710 aaggaaaatgttatttctctaaaaaaatagcatcaagaat 8692671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 305
Target Start/End: Complemental strand, 5481552 - 5481514
Alignment:
Q  267 ggaaaatgctatttctctagaaaaatagcatcaagaatt 305  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  5481552 ggaaaatattatttctctagaaaaatagcatcaagaatt 5481514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 311
Target Start/End: Original strand, 37093912 - 37093954
Alignment:
Q  269 aaaatgctatttctctagaaaaatagcatcaagaattcttcaa 311  Q
    |||||| ||||| |||||||||||||||||||||||| |||||    
T  37093912 aaaatgttatttttctagaaaaatagcatcaagaatttttcaa 37093954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 311
Target Start/End: Complemental strand, 4392041 - 4392000
Alignment:
Q  270 aaatgctatttctctagaaaaatagcatcaagaattcttcaa 311  Q
    ||||| ||| |||||||||||||| |||||||||||||||||    
T  4392041 aaatgttatatctctagaaaaataacatcaagaattcttcaa 4392000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 300
Target Start/End: Complemental strand, 34286793 - 34286760
Alignment:
Q  267 ggaaaatgctatttctctagaaaaatagcatcaa 300  Q
    |||||||| |||||||||||||||||||||||||    
T  34286793 ggaaaatgttatttctctagaaaaatagcatcaa 34286760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 311
Target Start/End: Original strand, 8692512 - 8692552
Alignment:
Q  271 aatgctatttctctagaaaaatagcatcaagaattcttcaa 311  Q
    |||| ||| |||||||||||||| |||||||||||||||||    
T  8692512 aatgttatatctctagaaaaataacatcaagaattcttcaa 8692552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 311
Target Start/End: Original strand, 32891178 - 32891218
Alignment:
Q  271 aatgctatttctctagaaaaatagcatcaagaattcttcaa 311  Q
    |||| ||| |||||||||||||| |||||||||||||||||    
T  32891178 aatgttatatctctagaaaaataacatcaagaattcttcaa 32891218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 258 - 313
Target Start/End: Complemental strand, 16255063 - 16255008
Alignment:
Q  258 tttatgaaaggaaaatgctatttctctagaaaaatagcatcaagaattcttcaata 313  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  16255063 tttataaaaggaaaatgctatttctctagaaaaatagcatcaagaatttttcaata 16255008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 260 - 311
Target Start/End: Complemental strand, 4624545 - 4624494
Alignment:
Q  260 tatgaaaggaaaatgctatttctctagaaaaatagcatcaagaattcttcaa 311  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  4624545 tatggaaggaaaatgctatttctctagaaaaatagcatcaagaattattcaa 4624494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 265 - 311
Target Start/End: Complemental strand, 42480325 - 42480279
Alignment:
Q  265 aaggaaaatgctatttctctagaaaaatagcatcaagaattcttcaa 311  Q
    |||||||||| |||||||||||||||||||||||||||||| |||||    
T  42480325 aaggaaaatgttatttctctagaaaaatagcatcaagaatttttcaa 42480279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 270 - 311
Target Start/End: Complemental strand, 41647424 - 41647383
Alignment:
Q  270 aaatgctatttctctagaaaaatagcatcaagaattcttcaa 311  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  41647424 aaatgctatttctctagaaaaatagcatcaagaatttttcaa 41647383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 263 - 311
Target Start/End: Complemental strand, 20809151 - 20809103
Alignment:
Q  263 gaaaggaaaatgctatttctctagaaaaatagcatcaagaattcttcaa 311  Q
    |||||||||||  |||||||||||||||||||||||||||||| |||||    
T  20809151 gaaaggaaaattttatttctctagaaaaatagcatcaagaatttttcaa 20809103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 268 - 311
Target Start/End: Complemental strand, 47550990 - 47550947
Alignment:
Q  268 gaaaatgctatttctctagaaaaatagcatcaagaattcttcaa 311  Q
    ||||||| |||||||||||||||||||||||||||||| |||||    
T  47550990 gaaaatgttatttctctagaaaaatagcatcaagaatttttcaa 47550947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 270 - 311
Target Start/End: Original strand, 9098571 - 9098612
Alignment:
Q  270 aaatgctatttctctagaaaaatagcatcaagaattcttcaa 311  Q
    ||||||| |||||||||||||||||||||||||||| |||||    
T  9098571 aaatgctttttctctagaaaaatagcatcaagaatttttcaa 9098612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 311
Target Start/End: Original strand, 31032695 - 31032740
Alignment:
Q  266 aggaaaatgctatttctctagaaaaatagcatcaagaattcttcaa 311  Q
    ||||||||| ||||| |||||||||||||||||||||||| |||||    
T  31032695 aggaaaatgttatttttctagaaaaatagcatcaagaatttttcaa 31032740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 311
Target Start/End: Complemental strand, 34476100 - 34476055
Alignment:
Q  266 aggaaaatgctatttctctagaaaaatagcatcaagaattcttcaa 311  Q
    ||||||| ||||||||||||||||||||| |||||||||| |||||    
T  34476100 aggaaaaggctatttctctagaaaaatagtatcaagaatttttcaa 34476055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 311
Target Start/End: Original strand, 1270175 - 1270215
Alignment:
Q  271 aatgctatttctctagaaaaatagcatcaagaattcttcaa 311  Q
    |||||||| |||||||||||||| |||||||||||||||||    
T  1270175 aatgctatatctctagaaaaataacatcaagaattcttcaa 1270215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 311
Target Start/End: Original strand, 4194770 - 4194810
Alignment:
Q  271 aatgctatttctctagaaaaatagcatcaagaattcttcaa 311  Q
    |||||||| |||||||||||||| |||||||||||||||||    
T  4194770 aatgctatatctctagaaaaataacatcaagaattcttcaa 4194810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 311
Target Start/End: Original strand, 20808951 - 20808991
Alignment:
Q  271 aatgctatttctctagaaaaatagcatcaagaattcttcaa 311  Q
    |||||||| |||||||||||||| |||||||||||||||||    
T  20808951 aatgctatatctctagaaaaataacatcaagaattcttcaa 20808991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 311
Target Start/End: Original strand, 34475903 - 34475943
Alignment:
Q  271 aatgctatttctctagaaaaatagcatcaagaattcttcaa 311  Q
    |||||||| |||||||||||||| |||||||||||||||||    
T  34475903 aatgctatatctctagaaaaataacatcaagaattcttcaa 34475943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 311
Target Start/End: Complemental strand, 1270373 - 1270327
Alignment:
Q  265 aaggaaaatgctatttctctagaaaaatagcatcaagaattcttcaa 311  Q
    ||||||| | |||||||||||||||||||||||||| |||| |||||    
T  1270373 aaggaaactactatttctctagaaaaatagcatcaaaaatttttcaa 1270327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 311
Target Start/End: Complemental strand, 45010401 - 45010355
Alignment:
Q  265 aaggaaaatgctatttctctagaaaaatagcatcaagaattcttcaa 311  Q
    |||||| ||| |||||||||||||||||||||| ||||||| |||||    
T  45010401 aaggaagatgttatttctctagaaaaatagcataaagaatttttcaa 45010355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 311
Target Start/End: Complemental strand, 29095717 - 29095677
Alignment:
Q  271 aatgctatttctctagaaaaatagcatcaagaattcttcaa 311  Q
    |||| ||| |||||||||||||| |||||||||||||||||    
T  29095717 aatgttatatctctagaaaaataacatcaagaattcttcaa 29095677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 311
Target Start/End: Complemental strand, 31032892 - 31032852
Alignment:
Q  271 aatgctatttctctagaaaaatagcatcaagaattcttcaa 311  Q
    |||| ||| |||||||||||||| |||||||||||||||||    
T  31032892 aatgttatatctctagaaaaatatcatcaagaattcttcaa 31032852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 311
Target Start/End: Original strand, 44714807 - 44714851
Alignment:
Q  267 ggaaaatgctatttctctagaaaaatagcatcaagaattcttcaa 311  Q
    |||||||| ||||| ||||||||||||| |||||||||| |||||    
T  44714807 ggaaaatgttatttttctagaaaaatagtatcaagaatttttcaa 44714851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 263 - 311
Target Start/End: Original strand, 23642974 - 23643022
Alignment:
Q  263 gaaaggaaaatgctatttctctagaaaaatagcatcaagaattcttcaa 311  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  23642974 gaaaggaaaatgctatttctctagaaaaatagcatcaagaatttttcaa 23643022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 265 - 305
Target Start/End: Complemental strand, 39145453 - 39145413
Alignment:
Q  265 aaggaaaatgctatttctctagaaaaatagcatcaagaatt 305  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  39145453 aaggaaaatgctatttctctagaaaaatagcatcaagaatt 39145413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 267 - 305
Target Start/End: Original strand, 34624486 - 34624524
Alignment:
Q  267 ggaaaatgctatttctctagaaaaatagcatcaagaatt 305  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  34624486 ggaaaatgttatttctctagaaaaatagcatcaagaatt 34624524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 311
Target Start/End: Complemental strand, 45166424 - 45166382
Alignment:
Q  269 aaaatgctatttctctagaaaaatagcatcaagaattcttcaa 311  Q
    |||||| |||||||||||||||||||||||||||||| |||||    
T  45166424 aaaatgttatttctctagaaaaatagcatcaagaatttttcaa 45166382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 267 - 305
Target Start/End: Complemental strand, 52546942 - 52546904
Alignment:
Q  267 ggaaaatgctatttctctagaaaaatagcatcaagaatt 305  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  52546942 ggaaaatgctatttctctagaaaaattgcatcaagaatt 52546904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 313
Target Start/End: Original strand, 50612871 - 50612919
Alignment:
Q  265 aaggaaaatgctatttctctagaaaaatagcatcaagaattcttcaata 313  Q
    |||||||||| |||||||||| ||||| ||||||||||||| |||||||    
T  50612871 aaggaaaatgttatttctctataaaaacagcatcaagaatttttcaata 50612919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 311
Target Start/End: Complemental strand, 50613069 - 50613029
Alignment:
Q  271 aatgctatttctctagaaaaatagcatcaagaattcttcaa 311  Q
    |||||||| |||||||||||||| |||||||||||||||||    
T  50613069 aatgctatatctctagaaaaataacatcaagaattcttcaa 50613029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 313
Target Start/End: Original strand, 45166230 - 45166272
Alignment:
Q  271 aatgctatttctctagaaaaatagcatcaagaattcttcaata 313  Q
    |||| ||| |||||||||||||| |||||||||||||||||||    
T  45166230 aatgttatatctctagaaaaataacatcaagaattcttcaata 45166272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 311
Target Start/End: Original strand, 31788309 - 31788349
Alignment:
Q  271 aatgctatttctctagaaaaatagcatcaagaattcttcaa 311  Q
    |||| ||| |||||||||||||| |||||||||||||||||    
T  31788309 aatgatatatctctagaaaaataacatcaagaattcttcaa 31788349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 311
Target Start/End: Complemental strand, 38176584 - 38176544
Alignment:
Q  271 aatgctatttctctagaaaaatagcatcaagaattcttcaa 311  Q
    |||| ||| |||||||||||||| |||||||||||||||||    
T  38176584 aatgttatatctctagaaaaatatcatcaagaattcttcaa 38176544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 264 - 317
Target Start/End: Complemental strand, 4824345 - 4824292
Alignment:
Q  264 aaaggaaaatgctatttctctagaaaaatagcatcaagaattcttcaatataaa 317  Q
    |||||||||||||||||||||||||||||||||| ||||||| ||||| |||||    
T  4824345 aaaggaaaatgctatttctctagaaaaatagcattaagaatttttcaagataaa 4824292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 266 - 311
Target Start/End: Complemental strand, 33889049 - 33889004
Alignment:
Q  266 aggaaaatgctatttctctagaaaaatagcatcaagaattcttcaa 311  Q
    |||||||||||||||||||||||||||||||||||||||| |||||    
T  33889049 aggaaaatgctatttctctagaaaaatagcatcaagaatttttcaa 33889004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 267 - 311
Target Start/End: Complemental strand, 41322729 - 41322685
Alignment:
Q  267 ggaaaatgctatttctctagaaaaatagcatcaagaattcttcaa 311  Q
    ||||||||||||||||||||||||||||||||||||||| |||||    
T  41322729 ggaaaatgctatttctctagaaaaatagcatcaagaatttttcaa 41322685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 267 - 311
Target Start/End: Original strand, 15561913 - 15561957
Alignment:
Q  267 ggaaaatgctatttctctagaaaaatagcatcaagaattcttcaa 311  Q
    |||||||||||||| |||||||||||||||||||||||| |||||    
T  15561913 ggaaaatgctatttatctagaaaaatagcatcaagaatttttcaa 15561957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 267 - 311
Target Start/End: Original strand, 36473048 - 36473092
Alignment:
Q  267 ggaaaatgctatttctctagaaaaatagcatcaagaattcttcaa 311  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||    
T  36473048 ggaaaatgctatttctctagaaaaataacatcaagaatttttcaa 36473092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 266 - 304
Target Start/End: Original strand, 13357628 - 13357666
Alignment:
Q  266 aggaaaatgctatttctctagaaaaatagcatcaagaat 304  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  13357628 aggaaaatgctatttatctagaaaaatagcatcaagaat 13357666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 311
Target Start/End: Complemental strand, 29314201 - 29314155
Alignment:
Q  265 aaggaaaatgctatttctctagaaaaatagcatcaagaattcttcaa 311  Q
    ||||||||||||||||||||| |||||||| |||||||||| |||||    
T  29314201 aaggaaaatgctatttctctaaaaaaatagtatcaagaatttttcaa 29314155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 267 - 305
Target Start/End: Original strand, 37919508 - 37919546
Alignment:
Q  267 ggaaaatgctatttctctagaaaaatagcatcaagaatt 305  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  37919508 ggaaaatgctatttctctagaaaaatagtatcaagaatt 37919546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 300
Target Start/End: Complemental strand, 2001850 - 2001814
Alignment:
Q  264 aaaggaaaatgctatttctctagaaaaatagcatcaa 300  Q
    ||||||||||| |||||||||||||||||||||||||    
T  2001850 aaaggaaaatgttatttctctagaaaaatagcatcaa 2001814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 308
Target Start/End: Original strand, 1196511 - 1196548
Alignment:
Q  271 aatgctatttctctagaaaaatagcatcaagaattctt 308  Q
    |||||||| |||||||||||||| ||||||||||||||    
T  1196511 aatgctatatctctagaaaaataacatcaagaattctt 1196548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 300
Target Start/End: Original strand, 1416048 - 1416081
Alignment:
Q  267 ggaaaatgctatttctctagaaaaatagcatcaa 300  Q
    |||||||| |||||||||||||||||||||||||    
T  1416048 ggaaaatgttatttctctagaaaaatagcatcaa 1416081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 305
Target Start/End: Original strand, 11653707 - 11653748
Alignment:
Q  264 aaaggaaaatgctatttctctagaaaaatagcatcaagaatt 305  Q
    |||| ||||||||||||||||| ||||||| |||||||||||    
T  11653707 aaagcaaaatgctatttctctacaaaaataacatcaagaatt 11653748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 305
Target Start/End: Complemental strand, 34392301 - 34392261
Alignment:
Q  265 aaggaaaatgctatttctctagaaaaatagcatcaagaatt 305  Q
    ||||||||||||||||||||| |||||||| || |||||||    
T  34392301 aaggaaaatgctatttctctaaaaaaatagaattaagaatt 34392261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 266 - 311
Target Start/End: Original strand, 14940985 - 14941030
Alignment:
Q  266 aggaaaatgctatttctctagaaaaatagcatcaagaattcttcaa 311  Q
    |||||||||||||||||||||||||||||||||||||||| |||||    
T  14940985 aggaaaatgctatttctctagaaaaatagcatcaagaatttttcaa 14941030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 257 - 310
Target Start/End: Complemental strand, 28429488 - 28429435
Alignment:
Q  257 ttttatgaaaggaaaatgctatttctctagaaaaatagcatcaagaattcttca 310  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||| ||||    
T  28429488 ttttattaaaggaaaatgctatttctttagaaaaatagcatcaagaatttttca 28429435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 265 - 305
Target Start/End: Complemental strand, 13686195 - 13686155
Alignment:
Q  265 aaggaaaatgctatttctctagaaaaatagcatcaagaatt 305  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  13686195 aaggaaaatgctatttctctagaaaaatagcatcaagaatt 13686155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 264 - 302
Target Start/End: Original strand, 35676267 - 35676305
Alignment:
Q  264 aaaggaaaatgctatttctctagaaaaatagcatcaaga 302  Q
    |||||||||||||||||||||||||||||||||||||||    
T  35676267 aaaggaaaatgctatttctctagaaaaatagcatcaaga 35676305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 267 - 311
Target Start/End: Original strand, 2752614 - 2752658
Alignment:
Q  267 ggaaaatgctatttctctagaaaaatagcatcaagaattcttcaa 311  Q
    ||||| ||||||||||||||||||||||||||||||||| |||||    
T  2752614 ggaaattgctatttctctagaaaaatagcatcaagaatttttcaa 2752658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 268 - 311
Target Start/End: Complemental strand, 19899118 - 19899075
Alignment:
Q  268 gaaaatgctatttctctagaaaaatagcatcaagaattcttcaa 311  Q
    |||||||||||||||||||||||||||||||| ||||| |||||    
T  19899118 gaaaatgctatttctctagaaaaatagcatcacgaatttttcaa 19899075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 266 - 305
Target Start/End: Original strand, 45093147 - 45093186
Alignment:
Q  266 aggaaaatgctatttctctagaaaaatagcatcaagaatt 305  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  45093147 aggaaaatgttatttctctagaaaaatagcatcaagaatt 45093186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 267 - 305
Target Start/End: Complemental strand, 24413903 - 24413865
Alignment:
Q  267 ggaaaatgctatttctctagaaaaatagcatcaagaatt 305  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  24413903 ggaaaatgctatttctctagaaaaatagcatcaataatt 24413865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 259 - 311
Target Start/End: Original strand, 28716307 - 28716360
Alignment:
Q  259 ttatgaaagg-aaaatgctatttctctagaaaaatagcatcaagaattcttcaa 311  Q
    |||||||||| |||||| ||||| |||||||||||||||||||||||| |||||    
T  28716307 ttatgaaagggaaaatgttatttttctagaaaaatagcatcaagaatttttcaa 28716360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 264 - 311
Target Start/End: Complemental strand, 25415116 - 25415069
Alignment:
Q  264 aaaggaaaatgctatttctctagaaaaatagcatcaagaattcttcaa 311  Q
    ||||||||||||||| ||||||||||||||| || ||||||| |||||    
T  25415116 aaaggaaaatgctatatctctagaaaaatagtataaagaatttttcaa 25415069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 311
Target Start/End: Original strand, 13685997 - 13686037
Alignment:
Q  271 aatgctatttctctagaaaaatagcatcaagaattcttcaa 311  Q
    |||||||| |||||||||||||| ||||||||||| |||||    
T  13685997 aatgctatatctctagaaaaataacatcaagaatttttcaa 13686037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 311
Target Start/End: Complemental strand, 16058568 - 16058528
Alignment:
Q  271 aatgctatttctctagaaaaatagcatcaagaattcttcaa 311  Q
    |||||||| |||||||||||||| ||| |||||||||||||    
T  16058568 aatgctatatctctagaaaaataacattaagaattcttcaa 16058528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 311
Target Start/End: Original strand, 41464902 - 41464942
Alignment:
Q  271 aatgctatttctctagaaaaatagcatcaagaattcttcaa 311  Q
    |||| |||||||||||||||||| ||||||||||| |||||    
T  41464902 aatgttatttctctagaaaaataacatcaagaatttttcaa 41464942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 311
Target Start/End: Original strand, 42263835 - 42263875
Alignment:
Q  271 aatgctatttctctagaaaaatagcatcaagaattcttcaa 311  Q
    |||| ||| |||||||||||||| |||||||||||||||||    
T  42263835 aatgttatatctctagaaaaataacatcaagaattcttcaa 42263875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 267 - 311
Target Start/End: Complemental strand, 41633416 - 41633372
Alignment:
Q  267 ggaaaatgctatttctctagaaaaatagcatcaagaattcttcaa 311  Q
    ||||||||||||||||||||||||||||||||||||||| |||||    
T  41633416 ggaaaatgctatttctctagaaaaatagcatcaagaatttttcaa 41633372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 266 - 305
Target Start/End: Complemental strand, 52726073 - 52726034
Alignment:
Q  266 aggaaaatgctatttctctagaaaaatagcatcaagaatt 305  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  52726073 aggaaaatgctatttctctagaaaaatagcatcaagaatt 52726034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 265 - 311
Target Start/End: Original strand, 18375388 - 18375434
Alignment:
Q  265 aaggaaaatgctatttctctagaaaaatagcatcaagaattcttcaa 311  Q
    |||||||||| |||||||||||||||||||||||||||||| |||||    
T  18375388 aaggaaaatgttatttctctagaaaaatagcatcaagaatttttcaa 18375434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 267 - 311
Target Start/End: Original strand, 23348112 - 23348156
Alignment:
Q  267 ggaaaatgctatttctctagaaaaatagcatcaagaattcttcaa 311  Q
    |||||||||||||||||||||||||||||||||| |||| |||||    
T  23348112 ggaaaatgctatttctctagaaaaatagcatcaataatttttcaa 23348156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 267 - 311
Target Start/End: Complemental strand, 54358312 - 54358268
Alignment:
Q  267 ggaaaatgctatttctctagaaaaatagcatcaagaattcttcaa 311  Q
    |||||||| |||||||||||||||||||||||||||||| |||||    
T  54358312 ggaaaatgttatttctctagaaaaatagcatcaagaatttttcaa 54358268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 268 - 311
Target Start/End: Original strand, 37674000 - 37674043
Alignment:
Q  268 gaaaatgctatttctctagaaaaatagcatcaagaattcttcaa 311  Q
    ||||||| |||||||||||||||||||||||||||||| |||||    
T  37674000 gaaaatgatatttctctagaaaaatagcatcaagaatttttcaa 37674043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 311
Target Start/End: Original strand, 17847539 - 17847585
Alignment:
Q  265 aaggaaaatgctatttctctagaaaaatagcatcaagaattcttcaa 311  Q
    |||||||||| ||||||||| |||||||||||||||||||| |||||    
T  17847539 aaggaaaatgttatttctctcgaaaaatagcatcaagaatttttcaa 17847585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 267 - 305
Target Start/End: Original strand, 54021241 - 54021279
Alignment:
Q  267 ggaaaatgctatttctctagaaaaatagcatcaagaatt 305  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  54021241 ggaaaatgttatttctctagaaaaatagcatcaagaatt 54021279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 265 - 313
Target Start/End: Original strand, 4512159 - 4512208
Alignment:
Q  265 aaggaaaatgctatttctctag-aaaaatagcatcaagaattcttcaata 313  Q
    |||||||||| ||||||||||| ||||||||||||||||||| |||||||    
T  4512159 aaggaaaatgttatttctctagaaaaaatagcatcaagaatttttcaata 4512208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 269 - 302
Target Start/End: Complemental strand, 47282259 - 47282226
Alignment:
Q  269 aaaatgctatttctctagaaaaatagcatcaaga 302  Q
    ||||||||||||||||||||||||||||||||||    
T  47282259 aaaatgctatttctctagaaaaatagcatcaaga 47282226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 311
Target Start/End: Original strand, 24683080 - 24683120
Alignment:
Q  271 aatgctatttctctagaaaaatagcatcaagaattcttcaa 311  Q
    |||||||| |||||||||||||| |||||||||||||||||    
T  24683080 aatgctatatctctagaaaaataacatcaagaattcttcaa 24683120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 311
Target Start/End: Original strand, 41497890 - 41497934
Alignment:
Q  267 ggaaaatgctatttctctagaaaaatagcatcaagaattcttcaa 311  Q
    ||||||||||||||||||| |||||||||||||| |||| |||||    
T  41497890 ggaaaatgctatttctctaaaaaaatagcatcaaaaattattcaa 41497934  T

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Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 268 - 311
Target Start/End: Complemental strand, 41878715 - 41878672
Alignment:
Q  268 gaaaatgctatttctctagaaaaatagcatcaagaattcttcaa 311  Q
    ||||||||||||| | |||||||||||||||||||||| |||||    
T  41878715 gaaaatgctatttatttagaaaaatagcatcaagaatttttcaa 41878672  T

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Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 305
Target Start/End: Original strand, 47838942 - 47838980
Alignment:
Q  267 ggaaaatgctatttctctagaaaaatagcatcaagaatt 305  Q
    |||| |||||||||||||| |||||||||||||||||||    
T  47838942 ggaacatgctatttctctataaaaatagcatcaagaatt 47838980  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 311
Target Start/End: Complemental strand, 4098576 - 4098536
Alignment:
Q  271 aatgctatttctctagaaaaatagcatcaagaattcttcaa 311  Q
    |||| ||| |||||||||||||| |||||||||||||||||    
T  4098576 aatgttatatctctagaaaaataacatcaagaattcttcaa 4098536  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 311
Target Start/End: Complemental strand, 18375585 - 18375545
Alignment:
Q  271 aatgctatttctctagaaaaatagcatcaagaattcttcaa 311  Q
    |||| ||| |||||||||||||| |||||||||||||||||    
T  18375585 aatgttatatctctagaaaaataacatcaagaattcttcaa 18375545  T

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Target: scaffold0339 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0339
Description:

Target: scaffold0339; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 265 - 305
Target Start/End: Complemental strand, 13444 - 13404
Alignment:
Q  265 aaggaaaatgctatttctctagaaaaatagcatcaagaatt 305  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  13444 aaggaaaatgatatttctctagaaaaatagcatcaagaatt 13404  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 311
Target Start/End: Original strand, 23991948 - 23991993
Alignment:
Q  266 aggaaaatgctatttctctagaaaaatagcatcaagaattcttcaa 311  Q
    |||||||||||||||||||||||| |||| |||||||||| |||||    
T  23991948 aggaaaatgctatttctctagaaacatagtatcaagaatttttcaa 23991993  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 264 - 305
Target Start/End: Complemental strand, 42195580 - 42195539
Alignment:
Q  264 aaaggaaaatgctatttctctagaaaaatagcatcaagaatt 305  Q
    ||||||||||| |||||||||||||||||| |||||||||||    
T  42195580 aaaggaaaatgttatttctctagaaaaataacatcaagaatt 42195539  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 311
Target Start/End: Original strand, 17611846 - 17611886
Alignment:
Q  271 aatgctatttctctagaaaaatagcatcaagaattcttcaa 311  Q
    |||||||| || ||||||||||| |||||||||||||||||    
T  17611846 aatgctatatcgctagaaaaataacatcaagaattcttcaa 17611886  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 311
Target Start/End: Original strand, 19479445 - 19479485
Alignment:
Q  271 aatgctatttctctagaaaaatagcatcaagaattcttcaa 311  Q
    |||||||| |||||||||||||| |||||| ||||||||||    
T  19479445 aatgctatatctctagaaaaataacatcaaaaattcttcaa 19479485  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 267 - 300
Target Start/End: Complemental strand, 17367016 - 17366983
Alignment:
Q  267 ggaaaatgctatttctctagaaaaatagcatcaa 300  Q
    ||||||||||||||||||||||||||||||||||    
T  17367016 ggaaaatgctatttctctagaaaaatagcatcaa 17366983  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 311
Target Start/End: Original strand, 7646773 - 7646817
Alignment:
Q  267 ggaaaatgctatttctctagaaaaatagcatcaagaattcttcaa 311  Q
    |||||||||||||||||||||||||||| |||| ||||| |||||    
T  7646773 ggaaaatgctatttctctagaaaaatagtatcaggaatttttcaa 7646817  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 297
Target Start/End: Complemental strand, 3835351 - 3835318
Alignment:
Q  264 aaaggaaaatgctatttctctagaaaaatagcat 297  Q
    ||||||||||| ||||||||||||||||||||||    
T  3835351 aaaggaaaatgttatttctctagaaaaatagcat 3835318  T

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Target: scaffold0002 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 311
Target Start/End: Original strand, 492670 - 492710
Alignment:
Q  271 aatgctatttctctagaaaaatagcatcaagaattcttcaa 311  Q
    |||| ||| |||||||||||||| |||||||||||||||||    
T  492670 aatgttatatctctagaaaaataacatcaagaattcttcaa 492710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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