View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15705_low_28 (Length: 286)
Name: NF15705_low_28
Description: NF15705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15705_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 274
Target Start/End: Complemental strand, 46938237 - 46937981
Alignment:
| Q |
18 |
tgattttcttagtaacaactaaatctccataaattaaaaagtgtggannnnnnnnctttctttcgtcttcctaatgatgttgtcttggatgttgttttca |
117 |
Q |
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| T |
46938237 |
tgattttcttagtaacaactaaatctccataaattaaaaagtgtggattttttttctttctttcgtcttcctaatgatattgtcttggatgttgttttca |
46938138 |
T |
|
| Q |
118 |
gtggatgcattggatttaccattcttaaatgcatatttggattcattgggtttgccaaattttaggaaaggttgtaacttcgcagcagctggttcaacta |
217 |
Q |
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| T |
46938137 |
gtggatgcattggatttaccattcttaaatgcatatttggattcattgggtttgccaaattttaggaaaggttgtaacttcgcagcagctggttcaacta |
46938038 |
T |
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| Q |
218 |
tccttccagccactgcatcatccatctgccctttctcctttgggattcaggtgtctc |
274 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46938037 |
tccttccagccactgcatcatccatctgccctttctcctttgggattcaggtgtctc |
46937981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 116 - 227
Target Start/End: Original strand, 36633973 - 36634084
Alignment:
| Q |
116 |
cagtggatgcattggatttaccattcttaaatgcatatttggattcattgggtttgccaaattttaggaaaggttgtaacttcgcagcagctggttcaac |
215 |
Q |
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||||||||||| |||| || |||||||||||||| ||| |||||||| |||| | ||||||||| | || || ||||| |||||||| |||||||| |
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| T |
36633973 |
cagtggatgcaatggacttgccattcttaaatgcctatctggattcagtgggctcgccaaatttccatcacggatgcaactttgcagcagcaggttcaac |
36634072 |
T |
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| Q |
216 |
tatccttccagc |
227 |
Q |
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| T |
36634073 |
tatccttccagc |
36634084 |
T |
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