View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15705_low_3 (Length: 666)
Name: NF15705_low_3
Description: NF15705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15705_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-104; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 246 - 458
Target Start/End: Complemental strand, 13792569 - 13792357
Alignment:
| Q |
246 |
tcattggcagcggttgtgccttggagggaggggtgacattttaaggtcaggattcttagaatgtgggaggtccctgtatttctgaaccctgatcaaccaa |
345 |
Q |
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|||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
13792569 |
tcattggcagcgattgtgcctgggagggaggggtgacattttaaggtcaggattcttagaatgtgggaggtccctgcatttatgaaccctgatcaaccaa |
13792470 |
T |
|
| Q |
346 |
actctttggagatggtgttgattgatgagaaggtctgtgtattttgatttgtatataagtttttgaattggggttcattgtgtgtcttttgtgcaattat |
445 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13792469 |
actctttggagatggtgttgattgatgagaaggtctgtgtattttgatttgtatataagtttttgaattggggttcattgtgtgtcttttgtgcaattat |
13792370 |
T |
|
| Q |
446 |
gataacatgtacc |
458 |
Q |
| |
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||| ||||||||| |
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| T |
13792369 |
gatgacatgtacc |
13792357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 468 - 657
Target Start/End: Complemental strand, 13791942 - 13791753
Alignment:
| Q |
468 |
ccagatgaagacaaaggtgaaaaagtttgaaggttttgctatttcaaacagtggactttcattcagcaagattgaagatttgtccaagcatattgctgat |
567 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
13791942 |
ccagatgaagacaaaggtgaaaaagtttgaaggttttgctatttcaaacagtggactttcattcagcaagattgaagatttgtccaagcatactgctgat |
13791843 |
T |
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| Q |
568 |
tatccatttttagttggtatgttttgattaattgagaaatttcattatatatgattttgtttacgttttgttgtggttgtttatgatgat |
657 |
Q |
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| T |
13791842 |
tatccatttttagttggtatgttttgattaattgagaaatttcattatatatgattttgtatacgttttgttgtggttgtttatgatgat |
13791753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 13792815 - 13792656
Alignment:
| Q |
1 |
ggaagatcttcccacatcttaatcttccattttgttttgttgtggaggtacaaattccttttttgttagttttgtctatatgttgaaatctctctattgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
13792815 |
ggaagatcttcccacatcttaatcttccattttgttttgttgtggaggtacatattccttttttgttagttttgtctatatgttgaaatatctctattgc |
13792716 |
T |
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| Q |
101 |
cctcttcttagtgtataaatacttttgtggtttggttgctgttttcagttggctctgtcg |
160 |
Q |
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||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
13792715 |
cctcttcttagtgtataaatagttgtgtggtttggttgctgttttcagttggctctgtcg |
13792656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 468 - 645
Target Start/End: Complemental strand, 18354088 - 18353913
Alignment:
| Q |
468 |
ccagatgaagacaaaggtgaaaaagtttgaaggttttgctatttcaaacagtggactttcattcagcaagattgaagatttgtccaagcatattgctgat |
567 |
Q |
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|||||||||||||||||| | ||| |||| |||| ||||||| | | | ||||||||||||||||||||||||||||||||| ||||||| |||| | |
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| T |
18354088 |
ccagatgaagacaaaggttcagaagattgagggttctgctattcccgataatggactttcattcagcaagattgaagatttgtcgaagcatactgctaac |
18353989 |
T |
|
| Q |
568 |
tatccatttttagttggtatgttttgattaattgagaaatttcattatatatgattttgtttacgttttgttgtggtt |
645 |
Q |
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||||||||||||||||||| ||||||||||||| | |||||||||| |||||||||||||||||||||| |||||| |
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| T |
18353988 |
tatccatttttagttggtaatttttgattaattgtg--atttcattatctatgattttgtttacgttttgtcgtggtt |
18353913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 18354727 - 18354577
Alignment:
| Q |
1 |
ggaagatcttcccacatcttaatcttccattttgttttgttgtggaggtacaaattccttttttgttagttttgtctatatgttgaaatctctctattgc |
100 |
Q |
| |
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|||| |||||||||||||||||||||| |||||||| | ||||||||||||| ||||||||||||| |||||||||| || ||||||||||||||||||| |
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| T |
18354727 |
ggaaaatcttcccacatcttaatcttctattttgttgtcttgtggaggtacatattccttttttgtcagttttgtctctaagttgaaatctctctattgc |
18354628 |
T |
|
| Q |
101 |
cctcttcttagtgtataaatacttttgtggtttggttgctgttttcagttg |
151 |
Q |
| |
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||||||| | |||||||||| | |||||| |||||| |||||||||||| |
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| T |
18354627 |
cctcttcctggtgtataaatggtggtgtggtatggttgttgttttcagttg |
18354577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 246 - 389
Target Start/End: Complemental strand, 18354480 - 18354337
Alignment:
| Q |
246 |
tcattggcagcggttgtgccttggagggaggggtgacattttaaggtcaggattcttagaatgtgggaggtccctgtatttctgaaccctgatcaaccaa |
345 |
Q |
| |
|
||||||||||| ||||||||| | ||||||||||| | ||||||||| ||||| ||||||||| |||||| ||| || |||||||||||||| |||| |
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| T |
18354480 |
tcattggcagccgttgtgcctggtagggaggggtggcgttttaaggttaggatctttagaatgtcggaggtaccttctttcctgaaccctgatcagccaa |
18354381 |
T |
|
| Q |
346 |
actctttggagatggtgttgattgatgagaaggtctgtgtattt |
389 |
Q |
| |
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||||||||||||||||| | |||||||||||||| ||| ||||| |
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| T |
18354380 |
actctttggagatggtgcttattgatgagaaggtatgtttattt |
18354337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 120; Significance: 5e-61; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 246 - 458
Target Start/End: Complemental strand, 24241093 - 24240886
Alignment:
| Q |
246 |
tcattggcagcggttgtgccttggagggaggggtgacattttaaggtcaggattcttagaatgtgggaggtccctgtatttctgaaccctgatcaaccaa |
345 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| | ||||||||||| ||| |||||||||||||||||||||| ||||||||||| |||||| |||| |
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| T |
24241093 |
tcattggcagcggttgtcccttggagggaggggtggcgttttaaggtcaagatccttagaatgtgggaggtccctgcatttctgaaccttgatcagccaa |
24240994 |
T |
|
| Q |
346 |
actctttggagatggtgttgattgatgagaaggtctgtgtattttgatttgtatataagtttttgaattggggttcattgtgtgtcttttgtgcaattat |
445 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| ||||||| || | ||||||||||||||||| ||||||||| | ||| ||||||| |
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| T |
24240993 |
actctttggagatggtgttgattgatgagaaggtatgtgta-tttgattggtgt----gtttttgaattggggtttattgtgtgtttgttgcgcaattac |
24240899 |
T |
|
| Q |
446 |
gataacatgtacc |
458 |
Q |
| |
|
||| ||||||||| |
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|
| T |
24240898 |
gatgacatgtacc |
24240886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 468 - 657
Target Start/End: Complemental strand, 24240687 - 24240498
Alignment:
| Q |
468 |
ccagatgaagacaaaggtgaaaaagtttgaaggttttgctatttcaaacagtggactttcattcagcaagattgaagatttgtccaagcatattgctgat |
567 |
Q |
| |
|
|||||||||||||||||| | ||| ||||| ||| ||| ||| || ||| |||||||||| |||||||||||||||||||||||||||||| || |||| |
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| T |
24240687 |
ccagatgaagacaaaggttcagaagattgaaagttctgccattccagacaatggactttcagtcagcaagattgaagatttgtccaagcatactgttgat |
24240588 |
T |
|
| Q |
568 |
tatccatttttagttggtatgttttgattaattgagaaatttcattatatatgattttgtttacgttttgttgtggttgtttatgatgat |
657 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
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| T |
24240587 |
tatccatttttagttggtagtttttgattaattgagtaatttcattatctatgattttgtttatgttttgttgtggttgtttatgatgat |
24240498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 24241344 - 24241193
Alignment:
| Q |
1 |
ggaagatcttcccacatcttaatcttccattttgttttgttgtggaggtacaaattccttttttgttagttttgtctatatgttgaaatctctctattgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || |||| ||||| |||| |||||||| |||||| ||| ||||||| | |||||||||||| |
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| T |
24241344 |
ggaagatcttcccacatcttaatcttccattttgttttattttggatgtacatattctttttttgtcagttttatctttatgttgtactctctctattgc |
24241245 |
T |
|
| Q |
101 |
cctcttcttagtgtataaatacttttgtggtttggttgctgttttcagttgg |
152 |
Q |
| |
|
| ||||| | ||||||||||| || |||||| ||||| ||||||||| |||| |
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|
| T |
24241244 |
cttcttcctggtgtataaatagttgtgtggtctggtttctgttttcaattgg |
24241193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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