View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15705_low_38 (Length: 239)
Name: NF15705_low_38
Description: NF15705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15705_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 11 - 215
Target Start/End: Complemental strand, 38310824 - 38310620
Alignment:
| Q |
11 |
gagtgagagaacgtgttgagctgagttaagaaggtcgagtttggagtacatgttgacgaggtggttggagaggaaagatgggagtggggtgacatgtgtg |
110 |
Q |
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| T |
38310824 |
gagtgagagaacgtgttgagctgagttaagaaggtcgagtttggagtacatgttgacgaggtggttggagaggaaagatgggagtggggtgacatgtgtg |
38310725 |
T |
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| Q |
111 |
cgaatgatgtgtgcatggatggtacgacctaagatggaacaatgtgttgaaacagctgattcgagtaaactacctagtaggttttgaggatgtatgttca |
210 |
Q |
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| T |
38310724 |
cgaatgatgtgtgcatggatggtacgacctaagatggaacaatgtgttgaaacagctgattcgagtaaactacctagtaggttttgaggatgtatgttca |
38310625 |
T |
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| Q |
211 |
ttgtg |
215 |
Q |
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| T |
38310624 |
ttgtg |
38310620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 14 - 215
Target Start/End: Complemental strand, 46920664 - 46920463
Alignment:
| Q |
14 |
tgagagaacgtgttgagctgagttaagaaggtcgagtttggagtacatgttgacgaggtggttggagaggaaagatgggagtggggtgacatgtgtgcga |
113 |
Q |
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| T |
46920664 |
tgagagaacgtgttgagctgagttaagaaggtcgagtttggagtacatgttgacgaggtggttggagaggaaagatggaagtggggtgacatgtgtgcga |
46920565 |
T |
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| Q |
114 |
atgatgtgtgcatggatggtacgacctaagatggaacaatgtgttgaaacagctgattcgagtaaactacctagtaggttttgaggatgtatgttcattg |
213 |
Q |
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| T |
46920564 |
atgatgtgtgcatggatggtacgacctaagatggaacaatgtgttgaaacagctgattcgagtaaacaacctagtaggttttgaggatgtatgttcattg |
46920465 |
T |
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| Q |
214 |
tg |
215 |
Q |
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| T |
46920464 |
tg |
46920463 |
T |
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