View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15705_low_4 (Length: 642)
Name: NF15705_low_4
Description: NF15705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15705_low_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 152; Significance: 4e-80; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 16 - 179
Target Start/End: Complemental strand, 14223593 - 14223430
Alignment:
| Q |
16 |
acagaccaaataaatttgtcaaagtacaaattctacggagccgtctgcaacattgactagaaatgttttaccctatttaatatagatataagagcccaaa |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
14223593 |
acagaccaaataaatttgtcaaagtacaaattctacggagccgtctgcaacattgactagaaatgttttaccctatttaatatagatttaagagcccaac |
14223494 |
T |
|
| Q |
116 |
tccaattgatcaaaagaaaaggatttgcagtctatgttttcattcaaaatataaaattttacaa |
179 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14223493 |
tccaattgatcaaaagaaaaggaattgcagtctatgttttcattcaaaatataaaattttacaa |
14223430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 557 - 626
Target Start/End: Complemental strand, 14223419 - 14223350
Alignment:
| Q |
557 |
actggccaacaatgtcgtaaaatggcgccactatagcaaaatggtgtggcgggttttgacaactaccata |
626 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
14223419 |
actggccaacaatgtcgtaaaatggcgccactatagcaaaatggtgtggcggattttgacaactaccata |
14223350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 385 - 505
Target Start/End: Complemental strand, 14227783 - 14227662
Alignment:
| Q |
385 |
taaattgtctcctttctaagcattgattctgtaatatgaaacatcatctggtaaaataaggcatgttttgtatct-ttttcttgtacgctaacgaaagac |
483 |
Q |
| |
|
||||||||| ||| ||||| |||||| |||| |||||||||||||||||||||||||||| ||||||||||| | |||||||| | ||||||||| |
|
|
| T |
14227783 |
taaattgtcctcttcctaaggattgatattgtagaatgaaacatcatctggtaaaataaggcaggttttgtatctgtggtcttgtacattgacgaaagac |
14227684 |
T |
|
| Q |
484 |
attacacaaaaatggttgcaaa |
505 |
Q |
| |
|
|||| || |||||| |||||| |
|
|
| T |
14227683 |
attatacggaaatggatgcaaa |
14227662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 272 - 345
Target Start/End: Complemental strand, 14227905 - 14227833
Alignment:
| Q |
272 |
tttattaacatgaccaggtcgaatgcgtaaggaaaccttgcaggcataggttcaatgaacttgttctcaaggga |
345 |
Q |
| |
|
||||||||||||| |||||| |||||| |||||| | | ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
14227905 |
tttattaacatgatcaggtcaaatgcggaaggaa-cttcgcaggcataggttcaataaacttgttctcaaggga |
14227833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 246
Target Start/End: Complemental strand, 14228004 - 14227927
Alignment:
| Q |
169 |
aaattttacaaggtgcttcaatacaagctttgaatagtcctgattaggtatgaataaactaggccaaaagaatacaag |
246 |
Q |
| |
|
|||||| |||||| ||||||| || ||||| || ||||||||||| | |||||||| |||||||||||||||||| |
|
|
| T |
14228004 |
aaatttgacaaggagcttcaaaactagcttagaccagtcctgattaaaaacgaataaacgaggccaaaagaatacaag |
14227927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University