View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15705_low_42 (Length: 234)
Name: NF15705_low_42
Description: NF15705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15705_low_42 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 36610742 - 36610946
Alignment:
| Q |
1 |
caccacgatgatttcgcaaatctcttctccctctgcaacgacgccgtttcacagaccgttaaagtctccgatgacctcgacaccgtcctaaggctggtat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36610742 |
caccacgatgatttcgcaaatctcttctccctctgcaacgacgccgtttcacagaccgttaaagtctccgatgacctcgacaccgtcctaaggctggtat |
36610841 |
T |
|
| Q |
101 |
tgttgagaataacatcactaaatttctatagagattgagatttaaagatatgagattaatttttatgaaatgacagtgtaaaatattttacacatgtaac |
200 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||||| ||| |
|
|
| T |
36610842 |
tgtagagaataacatcactaaatttctatagagat---------------tgagattaatttttattaactgacagtgtaaaatattttacacatgcaac |
36610926 |
T |
|
| Q |
201 |
aataaaaaacatgtcaaatc |
220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
36610927 |
aataaaaaacatgtcaaatc |
36610946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University