View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15705_low_44 (Length: 224)
Name: NF15705_low_44
Description: NF15705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15705_low_44 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 6915282 - 6915492
Alignment:
| Q |
1 |
gaaatttataccggtattcatgggtagtgctgtcaaaaacacgggggtacaaccacttctggatggtgtagttacttatttgccttgtccgattgaagtt |
100 |
Q |
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| T |
6915282 |
gaaatttataccggtattcatgggtagtgctgtcaaaaacacgggggtacaaccacttctggatggtgtagttagttatttgccttgtccgattgaagtt |
6915381 |
T |
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| Q |
101 |
agtaattatgctcttgaccaatccaagaatgaggagaaggttcagctgactggaagtcccgatgggccccttgtagcattggctttcaagttggagcaaa |
200 |
Q |
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| T |
6915382 |
agtaattatgctcttgaccaatccaagaatgaggagaaggttcagctgactggaagtcccgatgggcctcttgtagcattggctttcaagttggagcaaa |
6915481 |
T |
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| Q |
201 |
ggaagtttggt |
211 |
Q |
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|||||||||| |
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| T |
6915482 |
cgaagtttggt |
6915492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 43 - 141
Target Start/End: Complemental strand, 10543603 - 10543505
Alignment:
| Q |
43 |
gggggtacaaccacttctggatggtgtagttacttatttgccttgtccgattgaagttagtaattatgctcttgaccaatccaagaatgaggagaaggt |
141 |
Q |
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| T |
10543603 |
ggggttacaactacttttggatggtgtacttaattatttgccgtgtccaactgaagctagtaattatgctctcgtccaatccaagaatgaggaaaaggt |
10543505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 43 - 141
Target Start/End: Complemental strand, 10471405 - 10471307
Alignment:
| Q |
43 |
gggggtacaaccacttctggatggtgtagttacttatttgccttgtccgattgaagttagtaattatgctcttgaccaatccaagaatgaggagaaggt |
141 |
Q |
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| T |
10471405 |
ggggctacaactacttttggatggtgtacttaattatttgccgtgtccaactgaagctagtaattatgctctcgtccaatctaagaatgaggaaaaggt |
10471307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 43 - 141
Target Start/End: Original strand, 28106207 - 28106305
Alignment:
| Q |
43 |
gggggtacaaccacttctggatggtgtagttacttatttgccttgtccgattgaagttagtaattatgctcttgaccaatccaagaatgaggagaaggt |
141 |
Q |
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| T |
28106207 |
ggggctacaactacttttggatggtgtaattaattatttgccgtgtccaattgaagctagtaattatactcttgaccaatctaagcatggggaaaaggt |
28106305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 43 - 123
Target Start/End: Complemental strand, 27966469 - 27966389
Alignment:
| Q |
43 |
gggggtacaaccacttctggatggtgtagttacttatttgccttgtccgattgaagttagtaattatgctcttgaccaatc |
123 |
Q |
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| T |
27966469 |
ggggctacaactacttttggatggtgtaattaattatttgccgtgtccaattgaagctagtaattatactcttgaccaatc |
27966389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 141
Target Start/End: Complemental strand, 10859121 - 10859023
Alignment:
| Q |
43 |
gggggtacaaccacttctggatggtgtagttacttatttgccttgtccgattgaagttagtaattatgctcttgaccaatccaagaatgaggagaaggt |
141 |
Q |
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| T |
10859121 |
ggggctacaactacttttggatggtgtaactaattatttgccctgtccaactgaagttagtaattattctctcgacaaatctaagaatggggaaaaggt |
10859023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 122
Target Start/End: Original strand, 9081351 - 9081413
Alignment:
| Q |
60 |
tggatggtgtagttacttatttgccttgtccgattgaagttagtaattatgctcttgaccaat |
122 |
Q |
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| T |
9081351 |
tggatggtgtacttaattatttgccgtgtccaattgaagcaagtaattatgcgctcgaccaat |
9081413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 114
Target Start/End: Complemental strand, 10505551 - 10505487
Alignment:
| Q |
50 |
caaccacttctggatggtgtagttacttatttgccttgtccgattgaagttagtaattatgctct |
114 |
Q |
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| T |
10505551 |
caactacttttggatggtgtgcttaattatttgccgtgtccaactgaagctagtaattatgctct |
10505487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 43 - 141
Target Start/End: Complemental strand, 15044898 - 15044800
Alignment:
| Q |
43 |
gggggtacaaccacttctggatggtgtagttacttatttgccttgtccgattgaagttagtaattatgctcttgaccaatccaagaatgaggagaaggt |
141 |
Q |
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| T |
15044898 |
ggggatacaaccacttctggatggtgtacttagttatttgccatgtccaattgaagttaataattatgcccttgaccaatctaataaggaggagaaggt |
15044800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 138 - 211
Target Start/End: Complemental strand, 15044061 - 15043988
Alignment:
| Q |
138 |
aggttcagctgactggaagtcccgatgggccccttgtagcattggctttcaagttggagcaaaggaagtttggt |
211 |
Q |
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| T |
15044061 |
aggttgagctgcctggtaatcctgatgggccccttgtagcattggctttcaagttggaggaaagtaagtttggt |
15043988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 15045610 - 15045570
Alignment:
| Q |
1 |
gaaatttataccggtattcatgggtagtgctgtcaaaaaca |
41 |
Q |
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| T |
15045610 |
gaaatttataccggtattcatgggtagtgctttcaaaaaca |
15045570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 141
Target Start/End: Complemental strand, 33601124 - 33601026
Alignment:
| Q |
43 |
gggggtacaaccacttctggatggtgtagttacttatttgccttgtccgattgaagttagtaattatgctcttgaccaatccaagaatgaggagaaggt |
141 |
Q |
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| T |
33601124 |
ggggctacaaccacttttggatggtgtgcttaataatttgccgtgtccaactgaagcaactaattatgctctcatccaatctaagaatgaggaaaaggt |
33601026 |
T |
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