View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15705_low_45 (Length: 223)
Name: NF15705_low_45
Description: NF15705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15705_low_45 |
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| [»] chr8 (10 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 156; Significance: 5e-83; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 52 - 223
Target Start/End: Complemental strand, 5842489 - 5842318
Alignment:
| Q |
52 |
ttttaaggaaagtatttttcctttaaatgcaaaccctaatgtgatgctaaacttcaatcctcaccatcaagatcatctatacctttcaaactcgtctcca |
151 |
Q |
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||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
5842489 |
ttttaaggaaactttttttcctttaaatgcaaaccctaatgtgatgctaaacttcaatcctcaccatcaagatcacctatacctttcaaactcgtctcca |
5842390 |
T |
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| Q |
152 |
aatatgcaatgttttcaccaaactggtacaatggtagacatcaataaccatttcgatgccagattcctaccc |
223 |
Q |
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| T |
5842389 |
aatatgcaatgttttcaccaaactggtacaatggtagacatcaataaccatttcaatgccagattcctaccc |
5842318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 52 - 223
Target Start/End: Complemental strand, 5849199 - 5849028
Alignment:
| Q |
52 |
ttttaaggaaagtatttttcctttaaatgcaaaccctaatgtgatgctaaacttcaatcctcaccatcaagatcatctatacctttcaaactcgtctcca |
151 |
Q |
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||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
5849199 |
ttttaaggaaactttttttcctttaaatgcaaaccctaatgtgatgctaaacttcaatcctcaccatcaagatcacctatacctttcaaactcgtctcca |
5849100 |
T |
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| Q |
152 |
aatatgcaatgttttcaccaaactggtacaatggtagacatcaataaccatttcgatgccagattcctaccc |
223 |
Q |
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| T |
5849099 |
aatatgcaatgttttcaccaaactggtacaatggtagacatcaataaccatttcaatgccagattcctaccc |
5849028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 55 - 212
Target Start/End: Complemental strand, 5886787 - 5886630
Alignment:
| Q |
55 |
taaggaaagtatttttcctttaaatgcaaaccctaatgtgatgctaaacttcaatcctcaccatcaagatcatctatacctttcaaactcgtctccaaat |
154 |
Q |
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| T |
5886787 |
taagaaaagtttctttcctttaaatgcaaaccctaatgtgatcctaaacttcaatccttaccatcaagatctcctatacctttcaaattcatttccaaat |
5886688 |
T |
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| Q |
155 |
atgcaatgttttcaccaaactggtacaatggtagacatcaataaccatttcgatgcca |
212 |
Q |
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| T |
5886687 |
ctgcaatgttttcaacaacctgatacaaaggtagacatcaataacaatttcaatgcca |
5886630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 71 - 203
Target Start/End: Complemental strand, 5948129 - 5947991
Alignment:
| Q |
71 |
cctttaaatgcaaaccctaatgtgatgctaaacttcaatc---ctcaccatcaagatcatctatacctttcaaactcgtctccaaatatgcaatg---tt |
164 |
Q |
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| T |
5948129 |
cctttaaatgcaaaccctaatgtgatcctcaacttcaatcattataaccatcaagattacctataccattcaacctcatctccaaatctacaaggtaatt |
5948030 |
T |
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| Q |
165 |
ttcaccaaactggtacaatggtagacatcaataaccatt |
203 |
Q |
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| T |
5948029 |
ttcatcaaattgatacaaaggtagacatcaatgaccatt |
5947991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 71 - 203
Target Start/End: Complemental strand, 5983730 - 5983592
Alignment:
| Q |
71 |
cctttaaatgcaaaccctaatgtgatgctaaacttcaatc---ctcaccatcaagatcatctatacctttcaaactcgtctccaaatatgcaatg---tt |
164 |
Q |
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|||||||||||||||||||||||||| || |||||||||| | ||||||||||| | ||||||| ||||| ||| ||||||||| | ||| | || |
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| T |
5983730 |
cctttaaatgcaaaccctaatgtgatcctcaacttcaatcattataaccatcaagattacctataccattcaacctcatctccaaatctacaaggtaatt |
5983631 |
T |
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| Q |
165 |
ttcaccaaactggtacaatggtagacatcaataaccatt |
203 |
Q |
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| T |
5983630 |
ttcatcaaattgatacaaaggtagacatcaatgaccatt |
5983592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 71 - 203
Target Start/End: Complemental strand, 5959212 - 5959074
Alignment:
| Q |
71 |
cctttaaatgcaaaccctaatgtgatgctaaacttca---atcctcaccatcaagatcatctatacctttcaaactcgtctccaaatatgcaatg---tt |
164 |
Q |
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||||||||||||||||| ||||||| || ||||||| ||| ||||||||||||| | ||||||| ||||| ||| ||||||||| |||| | || |
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| T |
5959212 |
cctttaaatgcaaacccgaatgtgaccctcaacttcaatcatcatcaccatcaagattacctataccattcaacctcatctccaaatcagcaaagtaatt |
5959113 |
T |
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| Q |
165 |
ttcaccaaactggtacaatggtagacatcaataaccatt |
203 |
Q |
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| T |
5959112 |
ttcatcaaattgatacaaaggtagacatcaatgaccatt |
5959074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 5842425 - 5842473
Alignment:
| Q |
14 |
ggtgaggagtgaagtttagcatcacattagggcttgcattttaaggaaa |
62 |
Q |
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| T |
5842425 |
ggtgaggattgaagtttagcatcacattagggtttgcatttaaaggaaa |
5842473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 5849135 - 5849183
Alignment:
| Q |
14 |
ggtgaggagtgaagtttagcatcacattagggcttgcattttaaggaaa |
62 |
Q |
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| T |
5849135 |
ggtgaggattgaagtttagcatcacattagggtttgcatttaaaggaaa |
5849183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 75 - 192
Target Start/End: Complemental strand, 5920539 - 5920419
Alignment:
| Q |
75 |
taaatgcaaaccctaatgtgatgctaaacttcaatcctcaccatcaagatcatctatacctttcaaactcgtctccaaatatgcaatg---ttttcacca |
171 |
Q |
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| T |
5920539 |
taaatgcaaaccctaatgtgattctaaatttcaaccatcaccatgaagatcaactatgctatccaacctcatctccaaatctacaaggtaattttcacca |
5920440 |
T |
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| Q |
172 |
aactggtacaatggtagacat |
192 |
Q |
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| T |
5920439 |
aattgatacaaaggtagacat |
5920419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 5886730 - 5886775
Alignment:
| Q |
18 |
aggagtgaagtttagcatcacattagggcttgcattttaaggaaag |
63 |
Q |
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| T |
5886730 |
aggattgaagtttaggatcacattagggtttgcatttaaaggaaag |
5886775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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