View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15705_low_9 (Length: 560)
Name: NF15705_low_9
Description: NF15705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15705_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 14 - 541
Target Start/End: Complemental strand, 27016318 - 27015796
Alignment:
| Q |
14 |
caaaggcaaggagacttggggtttgtacaccggtattatatgctgttgatcctgtgttgcacacattaacatttgaattcgttgacggaccttcggtcaa |
113 |
Q |
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| T |
27016318 |
caaaagcaaggcgactcggtgtttgtactcctgtgctgtatgctgtggatcctgtatcacacactttaacatttgaatttgttgaaggaccttcagtcaa |
27016219 |
T |
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| Q |
114 |
agatgtatttcttgaattcggatcatgcggtgtcaatgaagagcgcctgggaaagattgcatcccaaattggtgatgtaattgcgaagttacatgatggt |
213 |
Q |
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| T |
27016218 |
agatgtatttctcgaattcggatcatgtggtgtcaatgaagagcgcttgggaaagattgcatcccaaattggtgatgtaattgcgaagttacatgatggt |
27016119 |
T |
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| Q |
214 |
ggtcttgttcatggcgatttaacaacatcaaacatgttactaaagaatgatactgatcagttggtgcgttcattcatctcttaggtcctgtaattaatat |
313 |
Q |
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| T |
27016118 |
ggtcttgttcatggcgatttaacaacatcaaacatgttactaaagaatgatactgatcagttggtgagttcattcgtctcttaggtcctggaattaatat |
27016019 |
T |
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| Q |
314 |
ttattacatttacttaggttatacaatatgagaaatatcattaacgtttgttagtgctgtgatgtgtattttgtgtaggttcttattgactttggtttga |
413 |
Q |
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| T |
27016018 |
ttattacatttacttag----tacaatatgagaaatatcattaacttttgttgctgctgtgatgtgtattttgtgtaggttcttattgactttggtttaa |
27015923 |
T |
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| Q |
414 |
gcttcacttcaactctaccagaagataaagctgtcgatttgtatgtttttagaaagagcccttgtttcgatgcattcttcatgtggtaatgtggtaagcc |
513 |
Q |
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| T |
27015922 |
gcttcacttcaactctaccagaagataaagccgtcgatttgtatg-ttttagaaagagcccttgtttcgatgcattcttcatgtggtaatgtggtaagcc |
27015824 |
T |
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| Q |
514 |
aaattctcattttcccaatagtcctaag |
541 |
Q |
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| T |
27015823 |
aacttctcattttcccaatagtcctaag |
27015796 |
T |
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