View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15706_high_2 (Length: 474)
Name: NF15706_high_2
Description: NF15706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15706_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 344; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 19 - 461
Target Start/End: Original strand, 9842337 - 9842778
Alignment:
| Q |
19 |
attcagtctttatttcattataatttgaatgtatctttgttacattgcagatgggtttgtaatattcttaatttgttgctttaaactgaatgctaatatg |
118 |
Q |
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| T |
9842337 |
attcagtctttatttcattataatttgaatgtatctttgttacattgcagatgggtttgtaatattcttaatttgttgctttaaactaaatgctaatatg |
9842436 |
T |
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| Q |
119 |
atactgtttgaaatcttctgttccattgctctgttatcatcatgtgcaaagattgatgaaagattgttgtaattccaaaagtcatttgctgtaatttttt |
218 |
Q |
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| T |
9842437 |
atactgtttgaaatcttctgttccgttgctttgttatcat---gtgcaaagattgatgaaagattgttgtaattccaagagtcattttctgcaatttttt |
9842533 |
T |
|
| Q |
219 |
ataatacttttgaagtcaaatccgattacnnnnnnnn--cttcttcttgcgattagaaaccgactatagtataaaaaagaacagcatgtttttattcttt |
316 |
Q |
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| T |
9842534 |
acaatacttttgaagtcaaatacgattactttttttcttcttcttcttgcgattagaaaccgactatagtataaaaaagaacagtatgtttttattcttt |
9842633 |
T |
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| Q |
317 |
atctttgttaaaaaattttgttcctataaacatttgttgaatagttacatacagtacgtcctttctcttcaaaatgcatacattgttctaatattggtga |
416 |
Q |
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|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9842634 |
atctttgttaaaaattcttgttcctataaacatttgttgaatagttacatacagtacgtcctttctcttcaaaatgcatacattgttctaatattggtga |
9842733 |
T |
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| Q |
417 |
aagttgaacttttatgtatcaagccataactctaatatattattc |
461 |
Q |
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| T |
9842734 |
aagttgtacttgtatgtatcaagccataactctaatatattattc |
9842778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 19 - 278
Target Start/End: Original strand, 9853282 - 9853541
Alignment:
| Q |
19 |
attcagtctttatttcattataatttgaatgtatctttgttacattgcagatgggtttgtaatattcttaatttgttgctttaaactgaatgctaatatg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9853282 |
attcagtctttatttcattataatttgaatgtatctttgttacattgcagatgggtttgtaatattcttaatttgttgctttaaactgaatgctaatatg |
9853381 |
T |
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| Q |
119 |
atactgtttgaaatcttctgttccattgctctgttatcatcatgtgcaaagattgatgaaagattgttgtaattccaaaagtcatttgctgtaatttttt |
218 |
Q |
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| T |
9853382 |
atactgtttgaaatcttctgttccattgctttgttatcatcatgtgcaaagattgatgaaagattgttgtaattccaaaagtcattttctgtaatttttt |
9853481 |
T |
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| Q |
219 |
ataatacttttgaagtcaaatccgattacnnnnnnnncttcttcttgcgattagaaaccg |
278 |
Q |
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| T |
9853482 |
ataatacttttgaagtcaaatccgattacttttttttcttcttcttgcgattagaaaccg |
9853541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 74 - 154
Target Start/End: Original strand, 11772731 - 11772810
Alignment:
| Q |
74 |
tttgtaatattcttaatttgttgctttaaactgaatgctaatatgatactgtttgaaatcttctgttccattgctctgtta |
154 |
Q |
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||||||||||||||||||||| ||||| || |||||| | |||||||||||||| |||| ||||||| || |||| ||||| |
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| T |
11772731 |
tttgtaatattcttaatttgtagcttt-aagtgaatgttcatatgatactgtttcaaattttctgtttcactgctttgtta |
11772810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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