View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15706_high_7 (Length: 250)
Name: NF15706_high_7
Description: NF15706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15706_high_7 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 17 - 250
Target Start/End: Complemental strand, 39771743 - 39771510
Alignment:
| Q |
17 |
gaattaggggtacgggaactcctcagattggtggagggggcaaggctagagaggctttgtggcagaggttggggaattgtatggatcagttgcattccat |
116 |
Q |
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| T |
39771743 |
gaattaggggtacgggaactcctcagattggtggagggggcaaggctagagaggctttgtggcagaggttggggaattgtatggatcagttgcattccat |
39771644 |
T |
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| Q |
117 |
tactgtggctgtgtggcatttgcagagggtgctttcgaagaaacgggatccctttactcatgttttgttgcttgatgaggttattcaggtgaggagagga |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39771643 |
tactgtggctgtgtggcatttgcagagggtgctttcgaagaaacgggatccctttactcatgttttgttgcttgatgaggttattcaggtgaggagagga |
39771544 |
T |
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| Q |
217 |
actttctcatccatattttgtagccatgtttcat |
250 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
39771543 |
actttctcatccatattttgtagccatgtttcat |
39771510 |
T |
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