View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15706_low_12 (Length: 216)

Name: NF15706_low_12
Description: NF15706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15706_low_12
NF15706_low_12
[»] chr7 (2 HSPs)
chr7 (131-203)||(48569018-48569090)
chr7 (12-72)||(48569141-48569201)
[»] chr8 (3 HSPs)
chr8 (138-201)||(10822202-10822265)
chr8 (138-201)||(36145131-36145194)
chr8 (7-66)||(10821878-10821937)


Alignment Details
Target: chr7 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 131 - 203
Target Start/End: Complemental strand, 48569090 - 48569018
Alignment:
Q  131 ccacaatgaatgtttaccttacgcatggtttcctctgattcataaggtttctctggaaaatgccacacaggtt 203  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48569090 ccacaatgaatgttcaccttacgcatggtttcctctgattcataaggtttctctggaaaatgccacacaggtt 48569018  T

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Target: chr7; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 48569201 - 48569141
Alignment:
Q  12 aggtattggagagatctcctatgactgatttcaatgcagactcagcacactgcaagatttc 72  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48569201 aggtattggagagatctcctatgactgatttcaatgcagactcagcacactgcaagatttc 48569141  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 138 - 201
Target Start/End: Original strand, 10822202 - 10822265
Alignment:
Q  138 gaatgtttaccttacgcatggtttcctctgattcataaggtttctctggaaaatgccacacagg 201  Q
    ||||||| ||||||||||| |||||||||||||||||   ||| ||||||||||||||||||||    
T  10822202 gaatgttcaccttacgcatagtttcctctgattcatatactttttctggaaaatgccacacagg 10822265  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 138 - 201
Target Start/End: Complemental strand, 36145194 - 36145131
Alignment:
Q  138 gaatgtttaccttacgcatggtttcctctgattcataaggtttctctggaaaatgccacacagg 201  Q
    ||||||| |||||||||||||| ||||||||||||||   ||| ||||||||||||||||||||    
T  36145194 gaatgttcaccttacgcatggtatcctctgattcatatactttttctggaaaatgccacacagg 36145131  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 66
Target Start/End: Original strand, 10821878 - 10821937
Alignment:
Q  7 aaaataggtattggagagatctcctatgactgatttcaatgcagactcagcacactgcaa 66  Q
    |||||| ||||| || |||||||||| |||||||||||| ||||| || |||||||||||    
T  10821878 aaaatatgtattcgaaagatctcctaagactgatttcaaggcagattctgcacactgcaa 10821937  T

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