View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15706_low_2 (Length: 494)
Name: NF15706_low_2
Description: NF15706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15706_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 107; Significance: 2e-53; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 148 - 274
Target Start/End: Complemental strand, 17725006 - 17724880
Alignment:
| Q |
148 |
ccacaccaatcaacataaatcaattcaacagttctttcatgtcgaccaaaattatgcaatgatccaaacagaaaaattgattatcaagcatcatgagaat |
247 |
Q |
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| T |
17725006 |
ccacaccaatcaacatatatcaattcaacagttcttccatgtcgaccaaaattatgcaatgatccaaacacaaaaattgacaatcaagcatcatgagaat |
17724907 |
T |
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| Q |
248 |
gttgcactacattccaaaattttacat |
274 |
Q |
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| T |
17724906 |
gttgcactacattccaaaattttacat |
17724880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 376 - 475
Target Start/End: Complemental strand, 17724777 - 17724678
Alignment:
| Q |
376 |
tctagatatttccgcaaccatcaacacgttgcatttgccttaatcaacgaacgcatcttccgccgaaataaccgatcctttttatatacaacagtttcac |
475 |
Q |
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| T |
17724777 |
tctagatatttccgcaaccatcaacacgttgcatttgccttaatcaacgaacgcatcttctgccgaaataaccgatcctttttatatacaacagtttcac |
17724678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 42 - 107
Target Start/End: Complemental strand, 17725115 - 17725049
Alignment:
| Q |
42 |
aagtgggtgtt-tttcattatatttccactgtaatcaaccttgcactagtaccaccaatcaattcat |
107 |
Q |
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| T |
17725115 |
aagtgggtgttatttcattatatttccactgtaatcaaccttgcactagtaccaccaatcaattcat |
17725049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 36480911 - 36480871
Alignment:
| Q |
1 |
atattatgcaaaaatccagagcactccctcaccaaatcctc |
41 |
Q |
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| T |
36480911 |
atattatgcaaaaatacagagctctccttcaccaaatcctc |
36480871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 41225986 - 41225946
Alignment:
| Q |
1 |
atattatgcaaaaatccagagcactccctcaccaaatcctc |
41 |
Q |
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| T |
41225986 |
atattatgcaaaaaaacagagcactccctcaccaactcctc |
41225946 |
T |
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