View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15706_low_5 (Length: 328)
Name: NF15706_low_5
Description: NF15706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15706_low_5 |
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| [»] scaffold0794 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-169; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 11445204 - 11445515
Alignment:
| Q |
1 |
acctccaacatcaactatagactccaaaccttcaaacacatgattgcactcttttagagcaaggttgaagatttgagaatcagcagccatagcctcttga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11445204 |
acctccaacatcaactatagactccaaaccttcaaacacatgattgcactcttttagagcaaggttgaagatttgagaatcagcagccatagcctcttga |
11445303 |
T |
|
| Q |
101 |
aacatactcagttcatcagattcagtatctttgttaagatagtcccaaaatgtctctcctcttgcgctctcaaagaggctaagttccttgtcctcagtga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
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|
| T |
11445304 |
aacatactcagttcatcagattcagtatctttgttaagatagtcccaaaatgtctctcctcttgcgctctcaaataggctgagttccttgtcctcagtga |
11445403 |
T |
|
| Q |
201 |
gccatttcttagaggagtgccacatgttcagacgacatggatgaagcactccgctaacaaatggtgacaaacatgttgatttgccacttatgagaagcat |
300 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11445404 |
gccatttcttagaggagtgccacacgttcagacgacatggatgaagcactccgctaacaaatggtgacaaacatgttgatttgccacttatgagaagcat |
11445503 |
T |
|
| Q |
301 |
tgaaggaggagt |
312 |
Q |
| |
|
|||||||||||| |
|
|
| T |
11445504 |
tgaaggaggagt |
11445515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 11547886 - 11547575
Alignment:
| Q |
1 |
acctccaacatcaactatagactccaaaccttcaaacacatgattgcactcttttagagcaaggttgaagatttgagaatcagcagccatagcctcttga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11547886 |
acctccaacatcaactatagactccaaaccttcaaacacatgattgcactcttttagagcaaggttgaagatttgagaatcagcagccatagcctcttga |
11547787 |
T |
|
| Q |
101 |
aacatactcagttcatcagattcagtatctttgttaagatagtcccaaaatgtctctcctcttgcgctctcaaagaggctaagttccttgtcctcagtga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
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|
| T |
11547786 |
aacatactcagttcatcagattcagtatctttgttaagatagtcccaaaatgtctctcctcttgcgctctcaaataggctgagttccttgtcctcagtga |
11547687 |
T |
|
| Q |
201 |
gccatttcttagaggagtgccacatgttcagacgacatggatgaagcactccgctaacaaatggtgacaaacatgttgatttgccacttatgagaagcat |
300 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11547686 |
gccatttcttagaggagtgccacacgttcagacgacatggatgaagcactccgctaacaaatggtgacaaacatgttgatttgccacttatgagaagcat |
11547587 |
T |
|
| Q |
301 |
tgaaggaggagt |
312 |
Q |
| |
|
|||||||||||| |
|
|
| T |
11547586 |
tgaaggaggagt |
11547575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 11507655 - 11507344
Alignment:
| Q |
1 |
acctccaacatcaactatagactccaaaccttcaaacacatgattgcactcttttagagcaaggttgaagatttgagaatcagcagccatagcctcttga |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11507655 |
acctccaacatcaactatagacttcaaaccttcaaacacatgattgcactcttttagagcaaggttgaagatttgagaatcagcagccatagcctcttga |
11507556 |
T |
|
| Q |
101 |
aacatactcagttcatcagattcagtatctttgttaagatagtcccaaaatgtctctcctcttgcgctctcaaagaggctaagttccttgtcctcagtga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||| |
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|
| T |
11507555 |
aacatactcagttcatcagattcagtatctttgttaagatagtcccaaaatgtctctcctcttgcgctctcaaagagactgagttccttctcctcagtga |
11507456 |
T |
|
| Q |
201 |
gccatttcttagaggagtgccacatgttcagacgacatggatgaagcactccgctaacaaatggtgacaaacatgttgatttgccacttatgagaagcat |
300 |
Q |
| |
|
|||||||| ||||||||| ||| |||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11507455 |
gccatttcgtagaggagtaccatatgttcagacgacatggatgaaccgttccggtaacaaatggtgacaaacatgttgatttgccacttatgagaagcat |
11507356 |
T |
|
| Q |
301 |
tgaaggaggagt |
312 |
Q |
| |
|
|||||||||||| |
|
|
| T |
11507355 |
tgaaggaggagt |
11507344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 8 - 309
Target Start/End: Original strand, 11468201 - 11468502
Alignment:
| Q |
8 |
acatcaactatagactccaaaccttcaaacacatgattgcactcttttagagcaaggttgaagatttgagaatcagcagccatagcctcttgaaacatac |
107 |
Q |
| |
|
|||||||| | ||| |||||||| ||||||||||| |||| || || |||||||| || || ||||| |||||||| ||||| ||| ||||||||| || |
|
|
| T |
11468201 |
acatcaaccaaagattccaaaccctcaaacacatggctgcagtccttgagagcaagcttaaacatttgtgaatcagctgccatggccccttgaaacagac |
11468300 |
T |
|
| Q |
108 |
tcagttcatcagattcagtatctttgttaagatagtcccaaaatgtctctcctcttgcgctctcaaagaggctaagttccttgtcctcagtgagccattt |
207 |
Q |
| |
|
|||| ||||||||||| ||||||||||||| ||| |||||||||| || |||| || ||| | || ||| ||||| ||||| | || |||||| |
|
|
| T |
11468301 |
caagtttatcagattcagaatctttgttaagaaagttaaaaaatgtctcccccattgcactttcataaagtgcaagatccttctcctctgagaaccattt |
11468400 |
T |
|
| Q |
208 |
cttagaggagtgccacatgttcagacgacatggatgaagcactccgctaacaaatggtgacaaacatgttgatttgccacttatgagaagcattgaagga |
307 |
Q |
| |
|
|||||||||||||||||| | |||| |||||||||||| | ||| |||||| ||||| ||||| ||||||| ||| | ||||||||| |||||||| |
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|
| T |
11468401 |
cttagaggagtgccacatatccagagaacatggatgaagaattcccttaacaagtggtgcaaaacaagttgattcaccattgatgagaagctttgaagga |
11468500 |
T |
|
| Q |
308 |
gg |
309 |
Q |
| |
|
|| |
|
|
| T |
11468501 |
gg |
11468502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 8 - 309
Target Start/End: Complemental strand, 11523260 - 11522959
Alignment:
| Q |
8 |
acatcaactatagactccaaaccttcaaacacatgattgcactcttttagagcaaggttgaagatttgagaatcagcagccatagcctcttgaaacatac |
107 |
Q |
| |
|
|||||||| | ||| |||||||| ||||||||||| |||| || || |||||||| || || ||||| |||||||| ||||| ||| ||||||||| || |
|
|
| T |
11523260 |
acatcaaccaaagattccaaaccctcaaacacatggctgcagtccttgagagcaagcttaaacatttgtgaatcagctgccatggccccttgaaacagac |
11523161 |
T |
|
| Q |
108 |
tcagttcatcagattcagtatctttgttaagatagtcccaaaatgtctctcctcttgcgctctcaaagaggctaagttccttgtcctcagtgagccattt |
207 |
Q |
| |
|
|||| ||||||||||| ||||||||||||| ||| |||||||||| || |||| || ||| | || ||| ||||| ||||| | || |||||| |
|
|
| T |
11523160 |
caagtttatcagattcagaatctttgttaagaaagttaaaaaatgtctcccccattgcactttcataaagtgcaagatccttctcctctgagaaccattt |
11523061 |
T |
|
| Q |
208 |
cttagaggagtgccacatgttcagacgacatggatgaagcactccgctaacaaatggtgacaaacatgttgatttgccacttatgagaagcattgaagga |
307 |
Q |
| |
|
|||||||||||||||||| | |||| |||||||||||| | ||| |||||| ||||| ||||| ||||||| ||| | ||||||||| |||||||| |
|
|
| T |
11523060 |
cttagaggagtgccacatatccagagaacatggatgaagaattcccttaacaagtggtgcaaaacaagttgattcaccattgatgagaagctttgaagga |
11522961 |
T |
|
| Q |
308 |
gg |
309 |
Q |
| |
|
|| |
|
|
| T |
11522960 |
gg |
11522959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 8 - 305
Target Start/End: Complemental strand, 34784454 - 34784157
Alignment:
| Q |
8 |
acatcaactatagactccaaaccttcaaacacatgattgcactcttttagagcaaggttgaagatttgagaatcagcagccatagcctcttgaaacatac |
107 |
Q |
| |
|
|||||||| | ||| |||||||| |||||||||| ||| ||| | |||||||| || || ||| |||||||||||||||||| |||||||||| || |
|
|
| T |
34784454 |
acatcaacaagagattccaaaccctcaaacacattcttgttctcatgaagagcaagcttaaacattctagaatcagcagccatagcatcttgaaacaaac |
34784355 |
T |
|
| Q |
108 |
tcagttcatcagattcagtatctttgttaagatagtcccaaaatgtctctcctcttgcgctctcaaagaggctaagttccttgtcctcagtgagccattt |
207 |
Q |
| |
|
||| | ||||||||| ||||||||||||| | |||||| | |||||||| |||| | |||||| || | ||||||| |||||| ||| |||||| |
|
|
| T |
34784354 |
tcaaagtaccagattcagaatctttgttaagaaaatcccaatagttctctcctgttgcacactcaaaaagagtttgttccttatcctcattgaaccattt |
34784255 |
T |
|
| Q |
208 |
cttagaggagtgccacatgttcagacgacatggatgaagcactccgctaacaaatggtgacaaacatgttgatttgccacttatgagaagcattgaag |
305 |
Q |
| |
|
||| || || | |||||||| | | || || ||||||| |||| || || | ||| |||||||| ||||| ||||||||||||||| |||||| |
|
|
| T |
34784254 |
ctttgaagacttccacatgtctatagaacttgcatgaagcgctccttcaataagcgttgataaacatgtcgattttccacttatgagaagctttgaag |
34784157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 309
Target Start/End: Complemental strand, 34776174 - 34775941
Alignment:
| Q |
76 |
agaatcagcagccatagcctcttgaaacatactcagttcatcagattcagtatctttgttaagatagtcccaaaatgtctctcctcttgcgctctcaaag |
175 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||| | |||||||| ||||||||||||| | |||||||| |||| ||| |||| | |||||| |
|
|
| T |
34776174 |
agaatcagatgccatagcatcttgaaacatactcaaagtactagattcagaatctttgttaagaaaatcccaaaaactctcccctgttgcacactcaaac |
34776075 |
T |
|
| Q |
176 |
aggctaagttccttgtcctcagtgagccatttcttagaggagtgccacatgttcagacgacatggatgaagcactccgctaacaaatggtgacaaacatg |
275 |
Q |
| |
|
| | ||||||| || ||| ||| ||||||||| ||||| |||||||| | | || ||||||||| |||| |||||| || || ||||||| |
|
|
| T |
34776074 |
aatgtttgttccttatcttcattgaaccatttctttgaggaactccacatgtctaaagaacttggatgaagtgctcctttaacaattgaagataaacatg |
34775975 |
T |
|
| Q |
276 |
ttgatttgccacttatgagaagcattgaaggagg |
309 |
Q |
| |
|
||| ||| ||||||||||||||| |||||||||| |
|
|
| T |
34775974 |
ttggttttccacttatgagaagctttgaaggagg |
34775941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0794 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: scaffold0794
Description:
Target: scaffold0794; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 2312 - 2001
Alignment:
| Q |
1 |
acctccaacatcaactatagactccaaaccttcaaacacatgattgcactcttttagagcaaggttgaagatttgagaatcagcagccatagcctcttga |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2312 |
acctccaacatcaactatagaccccaaaccttcaaacacatgattgcactcttttagagcaaggttgaagatttgagaatcagcagccatagcctcttga |
2213 |
T |
|
| Q |
101 |
aacatactcagttcatcagattcagtatctttgttaagatagtcccaaaatgtctctcctcttgcgctctcaaagaggctaagttccttgtcctcagtga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||| |
|
|
| T |
2212 |
aacatactcagttcatcagattcagtatctttgttaagatagtcccaaaatgtctctcctcttgcgctctcaaagagactgagttccttctcctcagtga |
2113 |
T |
|
| Q |
201 |
gccatttcttagaggagtgccacatgttcagacgacatggatgaagcactccgctaacaaatggtgacaaacatgttgatttgccacttatgagaagcat |
300 |
Q |
| |
|
|||||||| ||||||||| ||| |||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2112 |
gccatttcgtagaggagtaccatatgttcagacgacatggatgaaccgttccggtaacaaatggtgacaaacatgttgatttgccacttatgagaagcat |
2013 |
T |
|
| Q |
301 |
tgaaggaggagt |
312 |
Q |
| |
|
|||||||||||| |
|
|
| T |
2012 |
tgaaggaggagt |
2001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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