View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15706_low_7 (Length: 295)
Name: NF15706_low_7
Description: NF15706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15706_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 174 - 285
Target Start/End: Complemental strand, 3608732 - 3608621
Alignment:
| Q |
174 |
gcgcacctttgtatttttgtacattcaccacacttgttgcctatatttcatatcaatctttgttagttaactcgaagtcaaattttatgacctactaatg |
273 |
Q |
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| T |
3608732 |
gcgcacctttgtatttttgtacattcaccacacttattgcctatatttcatatcaatctttgttagttaactcgaagtcaaattttatgacctactaagg |
3608633 |
T |
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| Q |
274 |
agaaagtataat |
285 |
Q |
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| T |
3608632 |
agaaagtctaat |
3608621 |
T |
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Target: chr8; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 18 - 107
Target Start/End: Complemental strand, 3608888 - 3608799
Alignment:
| Q |
18 |
acaaagtcacataactaaatcacttaaaagtgaagaaaaattagggggtgaaaatataatcttggatcttgattgcattgtttagaatca |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3608888 |
acaaagtcacataactaaatcacttaaaagtgaagaaaatttagggggtgaaaatataatcttggatcttgattgcattgtttagaatca |
3608799 |
T |
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