View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15706_low_8 (Length: 291)
Name: NF15706_low_8
Description: NF15706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15706_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 16 - 290
Target Start/End: Complemental strand, 37831280 - 37831006
Alignment:
| Q |
16 |
aattttacatgcctgatttggtgatgtagatttcaataataggtcacttccggtatcaatgagttgtatgtgtaaatttgcatgcaagataccataaatt |
115 |
Q |
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| T |
37831280 |
aattttacatgcctgatttggtgatgtagatttcaataataggtcacttccggtatcaatgagttgtatgtgtaaatttgcatgcaagataccataaatt |
37831181 |
T |
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| Q |
116 |
atgggcaactgacaagatataaataacttgatagcatcgttcataaacctcatggctgagtgctttcagataagactgcaaaaacaaattaattattcat |
215 |
Q |
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| T |
37831180 |
atgggcaactgacaagatataaataacttgatggcatcgttcataaacctcatggctgagtgctttcagataagactgcaaaaacaaattaattattcat |
37831081 |
T |
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| Q |
216 |
tcctccaaaaggaaaaggaagaaggtttttcttagaaattacaatcttcatgcaaaccgactctacctcaactcc |
290 |
Q |
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| T |
37831080 |
tcctccaaaaggaaaaggaagaaggtttttcttagaaattacaatcttcatgcaaaccgactctacctcaactcc |
37831006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 109 - 290
Target Start/End: Original strand, 37832113 - 37832292
Alignment:
| Q |
109 |
ataaattatgggcaactgacaagatataaataacttgatagcatcgttcataaacctcatggctgagtgctttcagataagactgcaaaaacaaattaat |
208 |
Q |
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| T |
37832113 |
ataaatcatgggcaactgacaagatataaataacttgatagcatcgttcataaacgtcatggctgaatgctttgag-taagactgcaaaaacaaattaat |
37832211 |
T |
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| Q |
209 |
tattcattcctccaaaaggaaaaggaagaaggtttttcttagaaattacaatcttcatgcaaaccgactctacctcaactcc |
290 |
Q |
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| T |
37832212 |
cattgattcctccaaaaggaaaaggaagaagg-ttttgttataaattacaatcttcttgcaaaccgactctgcctcaactcc |
37832292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 109 - 290
Target Start/End: Original strand, 22534908 - 22535089
Alignment:
| Q |
109 |
ataaattatgggcaactgacaagatataaataacttgatagcatcgttcataaacctcatggctgagtgctttcagataagactgcaaaaacaaattaat |
208 |
Q |
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|||| ||||| ||| ||||||||||||||||||||||||||||||||| ||||| || ||||| || |||||| |||||||||||||||||||||||||| |
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| T |
22534908 |
ataagttatgagcatctgacaagatataaataacttgatagcatcgtttataaaacttatggccgaatgctttgagataagactgcaaaaacaaattaat |
22535007 |
T |
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| Q |
209 |
tattcattcctccaaaaggaaaaggaagaaggtttttcttagaaattacaatcttcatgcaaaccgactctacctcaactcc |
290 |
Q |
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| T |
22535008 |
tattcgtttctccaaaaggaaaaggaagaaggttttccttatacattacaatcttctggcaagccaactctgcctcaactcc |
22535089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 22534527 - 22534428
Alignment:
| Q |
17 |
attttacatgcctgatttggtgatgtagatttcaa-taataggtcacttccggtatcaatgagttgtatgtgt-------aaatttgcatgcaagatacc |
108 |
Q |
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| T |
22534527 |
attttacatgcctgctatgatgat-tagatttcaaattacaggtcacttcctgtatcaatgagttgtatgtgtgactgtaaaatttgcatgcaagatacc |
22534429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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