View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15707_high_1 (Length: 613)
Name: NF15707_high_1
Description: NF15707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15707_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 538; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 14 - 595
Target Start/End: Original strand, 4671011 - 4671591
Alignment:
| Q |
14 |
ttctgttcgtgttcacatggacattgtagagatgctggtttattgtgagcttgatgatcaaagttaatgcatgctccaaaagtgttactaaaattctttt |
113 |
Q |
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| T |
4671011 |
ttctgttcgtgttcacattgacattgtagagatgctgatttattgtgagcttgatgatcaaagttaatgcatgctccaaaagtgttactagaattccttt |
4671110 |
T |
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| Q |
114 |
caggtgtttaacttatgagacttgtcattaataatttaatcaaaaactactcattgagattgttatgctaaaatgataattttttcacaaaaaacttctc |
213 |
Q |
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| T |
4671111 |
caggtgtttaacttatgagacttgtcattaataatttaatcaaaaactactcattgagattgtcatgctaaaatgataattttttcacaaaaaacttctc |
4671210 |
T |
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| Q |
214 |
tcataaccctaacacttcgacctaatgtttaaggcccattttgtttgggtaacaagttatcaacatgactccacaatgttcataatgttcctcattgccc |
313 |
Q |
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| T |
4671211 |
tcataaccctaacacttcgacctaatgtttaaggcccattttgtttgggtaacaagttatcaacatgactccacaatgttcataatgttcctcattgccc |
4671310 |
T |
|
| Q |
314 |
ttaagtttcatgcttagttaacctttatagtagaacacgtcccatccagcagataaaatatttaaccttaactgctccaattcacattaggaattttaca |
413 |
Q |
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|||| ||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4671311 |
ttaa-tttcatgcttagttaacatttatagtagaacacttcccatccagcagaaaaaatatttaaccttaactgctccaattcacattaggaattttaca |
4671409 |
T |
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| Q |
414 |
agtactaattaaactaaccacaatgtttacaaaccaatgccaaaaagcatttatatatatagaggttgaaccatacatgagttaatcgagaactaagagg |
513 |
Q |
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| T |
4671410 |
agtactaattaaactaaccacaatgtttacaaaccaatgccaaaaagcatttatatatatagaggttgaaccatacatgagttaatcaagaactaagagg |
4671509 |
T |
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| Q |
514 |
aagaaaaggtatcaatgatggtagtgtgaagaggatcactcaaatgagtagcccagttgttaagtggtcctttaccagtagc |
595 |
Q |
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| T |
4671510 |
aagaaaaggtatcaatgatggtagtgtgaagaggatcactcaaatgagtagcccagttgttaagtggtcctttaccagtagc |
4671591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 309 - 375
Target Start/End: Original strand, 4670608 - 4670670
Alignment:
| Q |
309 |
tgcccttaagtttcatgcttagttaacctttatagtagaacacgtcccatccagcagataaaatatt |
375 |
Q |
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| T |
4670608 |
tgccctcaaatttcatgcttagttaacattta---tagaacacttcccatccagcaga-aaaatatt |
4670670 |
T |
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