View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15707_high_20 (Length: 214)

Name: NF15707_high_20
Description: NF15707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15707_high_20
NF15707_high_20
[»] chr8 (2 HSPs)
chr8 (41-206)||(32142979-32143144)
chr8 (39-92)||(10075599-10075652)
[»] chr1 (2 HSPs)
chr1 (44-92)||(4548695-4548743)
chr1 (44-91)||(7273988-7274035)
[»] chr6 (2 HSPs)
chr6 (41-98)||(18264300-18264357)
chr6 (44-92)||(1497955-1498003)
[»] chr7 (3 HSPs)
chr7 (44-92)||(31338482-31338530)
chr7 (44-96)||(44821933-44821985)
chr7 (44-92)||(30456498-30456546)
[»] chr5 (1 HSPs)
chr5 (46-92)||(16889711-16889757)
[»] chr3 (1 HSPs)
chr3 (38-75)||(31713956-31713993)
[»] chr4 (1 HSPs)
chr4 (47-87)||(18628596-18628636)


Alignment Details
Target: chr8 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 41 - 206
Target Start/End: Complemental strand, 32143144 - 32142979
Alignment:
Q  41 aagtaaagtcaaactgtttttatacaagttataagccgttttcataaactattctgaaatctgtttatgaacatgtctctctcaaagagttcgataagtg 140  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||    
T  32143144 aagttaagtcaaactgtttttatacaagttataagcggttttcataaactatcctgaaaactgtttatgaacatgtctctctcaaagagttcgataagtg 32143045  T
Q  141 ttaatgcaagtcaatctaaacggtatctaagaatagacgagattagattatgttatattcttggac 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  32143044 ttaatgcaagtcaatctaaacggtatctaagaatagacgagattagattatgttacatttttggac 32142979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 92
Target Start/End: Complemental strand, 10075652 - 10075599
Alignment:
Q  39 ataagtaaagtcaaactgtttttatacaagttataagccgttttcataaactat 92  Q
    |||| |||||||||||| |||||||| |||||||||||  ||||||||| ||||    
T  10075652 ataattaaagtcaaactatttttatataagttataagctattttcataagctat 10075599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 44 - 92
Target Start/End: Original strand, 4548695 - 4548743
Alignment:
Q  44 taaagtcaaactgtttttatacaagttataagccgttttcataaactat 92  Q
    |||||||||||||||||||||||||| |||||| |||||||||| ||||    
T  4548695 taaagtcaaactgtttttatacaagtcataagctgttttcataagctat 4548743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 91
Target Start/End: Complemental strand, 7274035 - 7273988
Alignment:
Q  44 taaagtcaaactgtttttatacaagttataagccgttttcataaacta 91  Q
    |||||||||| |||||| ||||||||||||||| |||| |||||||||    
T  7274035 taaagtcaaattgttttcatacaagttataagctgtttccataaacta 7273988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 98
Target Start/End: Original strand, 18264300 - 18264357
Alignment:
Q  41 aagtaaagtcaaactgtttttatacaagttataagccgttttcataaactattctgaa 98  Q
    ||||||||||||| |||||| |||||||||||||||  ||||| |||||||| |||||    
T  18264300 aagtaaagtcaaattgttttcatacaagttataagctattttcttaaactatcctgaa 18264357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 92
Target Start/End: Original strand, 1497955 - 1498003
Alignment:
Q  44 taaagtcaaactgtttttatacaagttataagccgttttcataaactat 92  Q
    ||||||||||||||||| |||  |||||||||  |||||||||||||||    
T  1497955 taaagtcaaactgttttcatatgagttataagaagttttcataaactat 1498003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 92
Target Start/End: Original strand, 31338482 - 31338530
Alignment:
Q  44 taaagtcaaactgtttttatacaagttataagccgttttcataaactat 92  Q
    ||||||||||||||||||||| ||||||||||  |||| ||||||||||    
T  31338482 taaagtcaaactgtttttatataagttataagttgtttccataaactat 31338530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 44821933 - 44821985
Alignment:
Q  44 taaagtcaaactgtttttatacaagttataagccgttttcataaactattctg 96  Q
    |||||||||| ||||||| || ||||||||||| |||||||||| ||||||||    
T  44821933 taaagtcaaattgtttttgtataagttataagctgttttcataagctattctg 44821985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 92
Target Start/End: Complemental strand, 30456546 - 30456498
Alignment:
Q  44 taaagtcaaactgtttttatacaagttataagccgttttcataaactat 92  Q
    |||||||||| |||||| ||| ||||||||||  |||||||||||||||    
T  30456546 taaagtcaaattgttttcatataagttataagtggttttcataaactat 30456498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 92
Target Start/End: Original strand, 16889711 - 16889757
Alignment:
Q  46 aagtcaaactgtttttatacaagttataagccgttttcataaactat 92  Q
    ||||||||||||||||||| ||| ||||||| |||||||||| ||||    
T  16889711 aagtcaaactgtttttatagaagctataagctgttttcataagctat 16889757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 75
Target Start/End: Original strand, 31713956 - 31713993
Alignment:
Q  38 gataagtaaagtcaaactgtttttatacaagttataag 75  Q
    ||||| ||||||||||||||||| ||||||||||||||    
T  31713956 gataaataaagtcaaactgttttgatacaagttataag 31713993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 87
Target Start/End: Complemental strand, 18628636 - 18628596
Alignment:
Q  47 agtcaaactgtttttatacaagttataagccgttttcataa 87  Q
    |||||||||||||||||| ||||||||| | ||||||||||    
T  18628636 agtcaaactgtttttatataagttataaactgttttcataa 18628596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University