View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15707_high_22 (Length: 202)

Name: NF15707_high_22
Description: NF15707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15707_high_22
NF15707_high_22
[»] chr8 (1 HSPs)
chr8 (1-194)||(1481699-1481889)
[»] chr4 (13 HSPs)
chr4 (1-183)||(5551720-5551901)
chr4 (1-183)||(5557485-5557666)
chr4 (1-182)||(5612087-5612267)
chr4 (1-182)||(5887744-5887924)
chr4 (81-183)||(5854577-5854678)
chr4 (1-192)||(5849522-5849712)
chr4 (11-183)||(5563270-5563441)
chr4 (13-192)||(5890816-5890994)
chr4 (1-183)||(3747467-3747648)
chr4 (3-192)||(5856612-5856800)
chr4 (9-192)||(5896603-5896785)
chr4 (81-183)||(5603968-5604069)
chr4 (95-183)||(253359-253444)
[»] chr2 (1 HSPs)
chr2 (81-136)||(43277546-43277601)


Alignment Details
Target: chr8 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 1481889 - 1481699
Alignment:
Q  1 aaattctgacaatcttcacaaccattgatttctcatccaatcactttgaaggattgataccagaggatctaatggaactgaaagcactccatgttctcaa 100  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  1481889 aaattctgacaat--tcacaaccattgatttctcatccaatcactttgaaggattgataccagaggatctaatggatctgaaagcactccatgttctcaa 1481792  T
Q  101 cttttcaaacaatgctttctccggtgaaatcccatcgactattgggaacctgaaacagttaagagtccttagacctctcaaattaccctttgtt 194  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||    
T  1481791 cttttcaaacaatgctttctccggtgaaatcccatcgactattgggaacctgaaacagtt-agagtccttagacctctcaaataactctttgtt 1481699  T

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Target: chr4 (Bit Score: 103; Significance: 2e-51; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 5551901 - 5551720
Alignment:
Q  1 aaattctgacaatcttcacaaccattgatttctcatccaatcactttgaaggattgataccagaggatctaatggaactgaaagcactccatgttctcaa 100  Q
    |||||||  ||||||||||| |||||||||||||||||||||| |||||||||   |||||| ||| ||| |||||| | |||||| |||||||||||||    
T  5551901 aaattctagcaatcttcacagccattgatttctcatccaatcattttgaaggaccaataccacaggttctgatggaattcaaagcaatccatgttctcaa 5551802  T
Q  101 cttttcaaacaatgctttctccggtgaaatcccatcgactattgggaacctgaaacagttaagagtccttagacctctcaaat 183  Q
    |||||| ||||||| | ||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||    
T  5551801 cttttcgaacaatggtatctccggtgaaatcccatcaactattgggaacctgaaacagtt-agagtcattagacctctcaaat 5551720  T

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Target: chr4; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 5557666 - 5557485
Alignment:
Q  1 aaattctgacaatcttcacaaccattgatttctcatccaatcactttgaaggattgataccagaggatctaatggaactgaaagcactccatgttctcaa 100  Q
    ||||||| ||||| || ||||||||||| |||||||||||||| |||||||||   |||||||| |  ||||||||  | |||||| |||||||||||||    
T  5557666 aaattctaacaatatttacaaccattgacttctcatccaatcattttgaaggaccaataccagatgtgctaatggacttcaaagcaatccatgttctcaa 5557567  T
Q  101 cttttcaaacaatgctttctccggtgaaatcccatcgactattgggaacctgaaacagttaagagtccttagacctctcaaat 183  Q
    |||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||  |||||||| ||||||||||||    
T  5557566 cttttcaaacaatgctctctctggtgaaatcccatcaactattgggaacctgaaacagtt-ggagtccttggacctctcaaat 5557485  T

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Target: chr4; HSP #3
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 5612267 - 5612087
Alignment:
Q  1 aaattctgacaatcttcacaaccattgatttctcatccaatcactttgaaggattgataccagaggatctaatggaactgaaagcactccatgttctcaa 100  Q
    ||||||| | ||||||||   ||||||||||||||||||||||||||||||||   ||||||||||  || ||| || | |||||| |||||||||||||    
T  5612267 aaattctaaaaatcttcatggccattgatttctcatccaatcactttgaaggaccaataccagaggggctgatgaaattcaaagcaatccatgttctcaa 5612168  T
Q  101 cttttcaaacaatgctttctccggtgaaatcccatcgactattgggaacctgaaacagttaagagtccttagacctctcaaa 182  Q
    |||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||| ||||||||| ||| |||||||    
T  5612167 cttttcaaacaatgctttctcttgtgaaatcccatcaactattgggaacctgaaacagtt-agagtccttggacttctcaaa 5612087  T

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Target: chr4; HSP #4
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 5887744 - 5887924
Alignment:
Q  1 aaattctgacaatcttcacaaccattgatttctcatccaatcactttgaaggattgataccagaggatctaatggaactgaaagcactccatgttctcaa 100  Q
    ||||||| |||||||| ||| |||||||||||||||||||||| |||||||||   |||||||| |  |||||| || | |||||||||| |||| ||||    
T  5887744 aaattctaacaatctttacagccattgatttctcatccaatcattttgaaggacaaataccagacgtgctaatgaaatttaaagcactccttgttttcaa 5887843  T
Q  101 cttttcaaacaatgctttctccggtgaaatcccatcgactattgggaacctgaaacagttaagagtccttagacctctcaaa 182  Q
    |||||||||||||| ||| || |||||||||||||  |||||||  |||||||||||||| ||||||||| |||||||||||    
T  5887844 cttttcaaacaatgatttttctggtgaaatcccattaactattgcaaacctgaaacagtt-agagtccttggacctctcaaa 5887924  T

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Target: chr4; HSP #5
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 81 - 183
Target Start/End: Original strand, 5854577 - 5854678
Alignment:
Q  81 aaagcactccatgttctcaacttttcaaacaatgctttctccggtgaaatcccatcgactattgggaacctgaaacagttaagagtccttagacctctca 180  Q
    |||||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||| |||||| ||||||||||||    
T  5854577 aaagcagtccatgttctcaacttttcaaacaatgctttctctggtgaaatcccatcaactatcgggaacctgaaacagtt-agagtcattagacctctca 5854675  T
Q  181 aat 183  Q
    |||    
T  5854676 aat 5854678  T

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Target: chr4; HSP #6
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 5849522 - 5849712
Alignment:
Q  1 aaattctgacaatcttcacaaccattgatttctcatccaatcactttgaaggattgataccagaggatctaatggaactgaaagcactccatgttctcaa 100  Q
    ||||||| | |||||| ||| |||||||||||||||||||||| || ||||||   |||||||||   |||||| || | || ||| |||||||||||||    
T  5849522 aaattctaaaaatctttacagccattgatttctcatccaatcatttcgaaggaccaataccagagttgctaatgaaatttaaggcaatccatgttctcaa 5849621  T
Q  101 cttttcaaacaatgctttctccggtgaaatcccatcgactattgggaacctgaaacagttaagagtccttagacctctcaaattaccctttg 192  Q
    |||||||||||||| ||| || |||||||||||||| |||||||  ||| |||||||| | ||||||||| |||||||||||| || |||||    
T  5849622 cttttcaaacaatgttttttctggtgaaatcccatcaactattgaaaacttgaaacagct-agagtccttggacctctcaaataactctttg 5849712  T

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Target: chr4; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 11 - 183
Target Start/End: Complemental strand, 5563441 - 5563270
Alignment:
Q  11 aatcttcacaaccattgatttctcatccaatcactttgaaggattgataccagaggatctaatggaactgaaagcactccatgttctcaacttttcaaac 110  Q
    |||||||||| |||||||||| ||||||||||| |||||||||    ||||| | |  || |||||  | ||||||||  ||||||||||||||||||||    
T  5563441 aatcttcacagccattgatttatcatccaatcattttgaaggaccactaccaaatgtgctgatggacttcaaagcactttatgttctcaacttttcaaac 5563342  T
Q  111 aatgctttctccggtgaaatcccatcgactattgggaacctgaaacagttaagagtccttagacctctcaaat 183  Q
    |||||| |||| |||||||| ||||| ||||| |||||||||||||||||  |||||||| ||||||||||||    
T  5563341 aatgctctctctggtgaaattccatcaactatcgggaacctgaaacagtt-ggagtccttggacctctcaaat 5563270  T

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Target: chr4; HSP #8
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 13 - 192
Target Start/End: Original strand, 5890816 - 5890994
Alignment:
Q  13 tcttcacaaccattgatttctcatccaatcactttgaaggattgataccagaggatctaatggaactgaaagcactccatgttctcaacttttcaaacaa 112  Q
    |||| ||| |||||||||||||||||||| | |||||||||   ||||||||||  |||||| || | |||||| |||||||||||||||||||||||||    
T  5890816 tctttacagccattgatttctcatccaattattttgaaggaccaataccagaggtcctaatgaaatttaaagcagtccatgttctcaacttttcaaacaa 5890915  T
Q  113 tgctttctccggtgaaatcccatcgactattgggaacctgaaacagttaagagtccttagacctctcaaattaccctttg 192  Q
    |||||| || ||||||||||| || |||||||  | |||  ||||| | ||||||||| |||||||||||| || |||||    
T  5890916 tgctttttctggtgaaatcccctccactattgcaagcctagaacagat-agagtccttggacctctcaaataactctttg 5890994  T

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Target: chr4; HSP #9
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 3747648 - 3747467
Alignment:
Q  1 aaattctgacaatcttcacaaccattgatttctcatccaatcactttgaaggattgataccagaggatctaatggaactgaaagcactccatgttctcaa 100  Q
    ||||||| |||||||||||| |||||||||||||||| ||||| |||||||||   || ||  |||  |||||| || | |||||| |||||||||||||    
T  3747648 aaattctaacaatcttcacagccattgatttctcatcgaatcattttgaaggaccaatcccgaaggtgctaatgaaattcaaagcaatccatgttctcaa 3747549  T
Q  101 cttttcaaacaatgctttctccggtgaaatcccatcgactattgggaacctgaaacagttaagagtccttagacctctcaaat 183  Q
    ||||||||||||   | |||| |||||||| ||||| ||||| || ||| |||||||||| ||||||||| ||||||||||||    
T  3747548 cttttcaaacaacaatctctctggtgaaattccatcaactataggaaacttgaaacagtt-agagtccttggacctctcaaat 3747467  T

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Target: chr4; HSP #10
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 3 - 192
Target Start/End: Complemental strand, 5856800 - 5856612
Alignment:
Q  3 attctgacaatcttcacaaccattgatttctcatccaatcactttgaaggattgataccagaggatctaatggaactgaaagcactccatgttctcaact 102  Q
    ||||| |||||||||||| |||||||||| ||||||||||| ||||||||    |||||||| |     ||| |  | |||||||| |||||||||||||    
T  5856800 attctaacaatcttcacagccattgatttatcatccaatcattttgaaggtaaaataccagaagcgacgatgaacttcaaagcacttcatgttctcaact 5856701  T
Q  103 tttcaaacaatgctttctccggtgaaatcccatcgactattgggaacctgaaacagttaagagtccttagacctctcaaattaccctttg 192  Q
    |||||||||||  | |||| ||||||||||||||  ||||||| ||| ||||||||||  ||||| ||||||||||||||| || |||||    
T  5856700 tttcaaacaattgtctctcaggtgaaatcccatcttctattggaaacttgaaacagtt-ggagtcattagacctctcaaataactctttg 5856612  T

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Target: chr4; HSP #11
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 9 - 192
Target Start/End: Original strand, 5896603 - 5896785
Alignment:
Q  9 acaatcttcacaaccattgatttctcatccaatcactttgaaggattgataccagaggatctaatggaactgaaagcactccatgttctcaacttttcaa 108  Q
    |||||||| ||| |||||||||||||||| ||||| || ||||||   |||||| | |   | |||||| | |||||| ||||| ||||||||||||| |    
T  5896603 acaatctttacagccattgatttctcatcaaatcatttcgaaggaccaataccacatgtgttgatggaattcaaagcaatccattttctcaacttttcga 5896702  T
Q  109 acaatgctttctccggtgaaatcccatcgactattgggaacctgaaacagttaagagtccttagacctctcaaattaccctttg 192  Q
    |||||| |||||  |||||||| ||||| |||||||  |||||||||||  | ||||||||| |||||||||||| || |||||    
T  5896703 acaatggtttctatggtgaaattccatcaactattgcaaacctgaaacaact-agagtccttggacctctcaaataactctttg 5896785  T

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Target: chr4; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 81 - 183
Target Start/End: Complemental strand, 5604069 - 5603968
Alignment:
Q  81 aaagcactccatgttctcaacttttcaaacaatgctttctccggtgaaatcccatcgactattgggaacctgaaacagttaagagtccttagacctctca 180  Q
    ||||||||  |||||||||||||||||||||||| | |||  |||||||||||||| ||| |||||||||||||||||||  ||||| || |||||||||    
T  5604069 aaagcactttatgttctcaacttttcaaacaatggtctctatggtgaaatcccatcaactgttgggaacctgaaacagtt-ggagtctttggacctctca 5603971  T
Q  181 aat 183  Q
    |||    
T  5603970 aat 5603968  T

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Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 183
Target Start/End: Original strand, 253359 - 253444
Alignment:
Q  95 tctcaacttttcaaacaatgctttctccggtgaaatcccatcgactattgggaacctgaaacagttaagagtccttagacctctcaaat 183  Q
    |||||||||||||||||||| |  ||| || |||||||| ||  |||| |||||| ||||||| ||| |||||||||||||||||||||    
T  253359 tctcaacttttcaaacaatggt--ctcaggcgaaatcccgtcttctatagggaacttgaaacaatta-gagtccttagacctctcaaat 253444  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 136
Target Start/End: Complemental strand, 43277601 - 43277546
Alignment:
Q  81 aaagcactccatgttctcaacttttcaaacaatgctttctccggtgaaatcccatc 136  Q
    ||||||||  |||||||||||||||||||||||  |||||| ||||||||||||||    
T  43277601 aaagcactatatgttctcaacttttcaaacaatcatttctcaggtgaaatcccatc 43277546  T

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