View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15707_high_6 (Length: 403)
Name: NF15707_high_6
Description: NF15707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15707_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 12 - 387
Target Start/End: Original strand, 44737573 - 44737959
Alignment:
| Q |
12 |
atgaaagcgtgcatatgaagaggggagtaatcgaggtgaatgtggggtatctagcagacaaaaacgtgtgttggagctgagcttctttctcttcaaccgt |
111 |
Q |
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| T |
44737573 |
atgaaagcgtgcatatgaagaggggagtaatcgaggtgaatgtggggtatctagcagacaaaaacgtgtgttggagctgagcttctttctcttcaaccgt |
44737672 |
T |
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| Q |
112 |
cccttattcgcatggcgtgcgcctcacctttacaactacaacatgtcatggtgcgctgctgtgcggccttcagccctcattcccatacgacaactgcctg |
211 |
Q |
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| T |
44737673 |
ctcttattcgcatggcgtgcgtctcacctttacaactacaacatgtcatggtgcgctgctgtgcggccttcagccctcattcccacacgacaactgcctg |
44737772 |
T |
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| Q |
212 |
tacccggttacttgtcagtcaccccacacccattccacatccttccttactttattctatccatttccataaca--ttttgaaatattcatcatgcttac |
309 |
Q |
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| T |
44737773 |
tacccggttacttgtcagtcaccccacacccattccacacccttccttactttattctatccatttccataacatgttttgaaatattcatcatgcttac |
44737872 |
T |
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| Q |
310 |
---------tttctttgtttattctatccatcaacaaggagtgataatttttaaaattttatttacttatttcctcaaaatgattat |
387 |
Q |
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| T |
44737873 |
ttttttttttttttttttttattctatccatcaacaaggagtgataatttttaaaattttatttacttatttcctcaaaatgattat |
44737959 |
T |
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