View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15707_low_12 (Length: 323)
Name: NF15707_low_12
Description: NF15707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15707_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 100 - 262
Target Start/End: Original strand, 38711552 - 38711714
Alignment:
| Q |
100 |
actttgtgtacagacaaaataatgtattgattgatataatcaataaaacctagctcaactgataatatcgaaattgttaggctggacgcctttatttaag |
199 |
Q |
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| T |
38711552 |
actttgtgtacagacaaaataatatattgattgatataatcaataaaacctagctcaactgataatgtcgaaattgttagattgaacgcctttatttgag |
38711651 |
T |
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| Q |
200 |
ttgaaatccagaaccttgttgtatgtgtgtgttttaatggtgtttatcacttcgttcgcagac |
262 |
Q |
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| T |
38711652 |
ttgaaatccagaactttgctgtatgtgtgagttttaatgatgtttaccacttcgtttgcagac |
38711714 |
T |
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Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 38735450 - 38735526
Alignment:
| Q |
20 |
atagtggccataaagtggacggcattttgatggtcatgaagaagatgacacaattatattttatagttaaatgcaat |
96 |
Q |
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| T |
38735450 |
atagtggccataaagtggacggcattttgatggtcatgaagaagatgacacaattatattttatagttaaatgcaat |
38735526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 178
Target Start/End: Original strand, 38711433 - 38711482
Alignment:
| Q |
129 |
attgatataatcaataaaacctagctcaactgataatatcgaaattgtta |
178 |
Q |
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| T |
38711433 |
attgatataatctttaaagcctagttcaactgataatgtcgaaattgtta |
38711482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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