View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15707_low_15 (Length: 314)
Name: NF15707_low_15
Description: NF15707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15707_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 1730715 - 1730412
Alignment:
| Q |
1 |
acaatcattaatcttcttc---ttctctaaattctctcaatttgtcaaccctaaattcataagcaaaacctaacttgcactgcaaggaatatattttgcg |
97 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
1730715 |
acaatcattaatcttcttcttcttctctaaattctctcaatttgtcaaccctaaattcataaacaaaacctaacttgcactgcaaggaatatattttgcg |
1730616 |
T |
|
| Q |
98 |
ctatcagatttcaccgctgctgaggttggcttagccatcaagcaaatgaagagcaatgctacccctgctgggctcacaactcttttcataaatcttaaa- |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
1730615 |
ctatcagatttcaccgctgctgaggttggcttagccattaagcaaatgaagagcaatgctacccctgatggactcacaactcttttcataaatcttaaag |
1730516 |
T |
|
| Q |
197 |
gggaaactattggtccagatattattaattatgtgtttactgttctcaataacatgggaggtccttgtaatatcaactacacatttatatgtttgtttcc |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1730515 |
gggaaactattggtccagatattattaattatgtgtttactgttctcaataacatgggaggtccttgtaatatcaactacacatttatatgtttgtttcc |
1730416 |
T |
|
| Q |
297 |
caag |
300 |
Q |
| |
|
|||| |
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| T |
1730415 |
caag |
1730412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 83
Target Start/End: Complemental strand, 3079614 - 3079560
Alignment:
| Q |
29 |
ttctctcaatttgtcaaccctaaattcataagcaaaacctaacttgcactgcaag |
83 |
Q |
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|||||||||||||||||||||||||||||| ||| |||| ||||||||||||| |
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| T |
3079614 |
ttctctcaatttgtcaaccctaaattcatagagaaaccctagcttgcactgcaag |
3079560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 83
Target Start/End: Complemental strand, 1730907 - 1730874
Alignment:
| Q |
50 |
aaattcataagcaaaacctaacttgcactgcaag |
83 |
Q |
| |
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|||||||||| ||||||||||||||||||||||| |
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|
| T |
1730907 |
aaattcataaacaaaacctaacttgcactgcaag |
1730874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 5437938 - 5437994
Alignment:
| Q |
9 |
taatcttcttcttctctaaattctctcaatttgtcaaccctaaattcataagcaaaa |
65 |
Q |
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||||||||| ||||||| |||||||||||||| | |||||||| ||||||| ||||| |
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| T |
5437938 |
taatcttctccttctctcaattctctcaatttctaaaccctaatttcataaccaaaa |
5437994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 15566839 - 15566780
Alignment:
| Q |
1 |
acaatcattaatcttcttcttctctaaattctctcaa-tttgtcaaccctaaattcataa |
59 |
Q |
| |
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|||||||||| |||||||||||||||| ||||| ||| ||| ||||||||||||||||| |
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| T |
15566839 |
acaatcattactcttcttcttctctaatttctcccaattttcacaaccctaaattcataa |
15566780 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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