View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15707_low_18 (Length: 259)
Name: NF15707_low_18
Description: NF15707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15707_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 10 - 252
Target Start/End: Original strand, 6226797 - 6227039
Alignment:
| Q |
10 |
gtttcgatgaatatttctggtacttcgctacctagacttatgttcttgctcannnnnnnaggttttgtattggcatttgttgttagacctggtacaagtc |
109 |
Q |
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| T |
6226797 |
gtttcgatgaatatttctggtacttcgctacctagacttatgttcttgctcattttgttaggttttgtattggcatttgttgttagacctggtacaagtc |
6226896 |
T |
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| Q |
110 |
cttctgatagtcatgcctacacactggatcatcacatgcacacatgagccatgataaacaggtcagttcccggtgctatactgcaatatttacagcgatg |
209 |
Q |
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| T |
6226897 |
cttctgatagtcatgcctacacactggatcatcacatgcacacatgagccatgataaacaggtcagttcccggtgctatactgcaatatttacagcgatg |
6226996 |
T |
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| Q |
210 |
ataataataaacgacaagaatgagctaaatattatcctatgct |
252 |
Q |
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| T |
6226997 |
ataataataaacgacaagaatgtgctaaatataatcctatgct |
6227039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 12 - 252
Target Start/End: Original strand, 37060124 - 37060361
Alignment:
| Q |
12 |
ttcgatgaatatttctggtacttcgctacctagacttatgttcttgctcannnnnnnaggttttgtattggcatttgttgttagacctggtacaagtcct |
111 |
Q |
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||||||||||||||||| ||||| ||||||||||||||||||||| |||| ||||||||||||| |||||||||||| || |||||||||||| |
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| T |
37060124 |
ttcgatgaatatttctgatactttgctacctagacttatgttcttactcattttgtttggttttgtattggtatttgttgttaggccgggtacaagtcct |
37060223 |
T |
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| Q |
112 |
tctgatagtcatgcctacacactggatcatcacatgcacacatgagccatgataaacaggtcagttcccggtgctatactgcaatatttacagcgatgat |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
37060224 |
tctgatagtcatgcctacacactggatcatcacatgcacacatgagccatgata---aggtcagttcccggtgctatactgcaatatttatagcgatgat |
37060320 |
T |
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| Q |
212 |
aataataaacgacaagaatgagctaaatattatcctatgct |
252 |
Q |
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|||||||||||| ||||||||| ||||||| ||| |||||| |
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| T |
37060321 |
aataataaacgataagaatgagataaatataatcatatgct |
37060361 |
T |
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