View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15707_low_2 (Length: 547)
Name: NF15707_low_2
Description: NF15707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15707_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 2e-93; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 177 - 535
Target Start/End: Original strand, 13864428 - 13864758
Alignment:
| Q |
177 |
agactatatcggagaggggcacgagtttttctctttttat-----gaagaaataaatgtatgttttccacccattttgcatataacaaaaaatgtgaaca |
271 |
Q |
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| T |
13864428 |
agactatatcagagaggggcacaagtttttctctttttattttatgaagaaataaatatatgttttccac--------------acaaaaa--gtgaaca |
13864511 |
T |
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| Q |
272 |
agtgcctccacctaagcagaaccaagcacatcaccacagtagtaaaagtggtttgtgcttgtcattaacattgaaacttgaaagaggtttggtatcttag |
371 |
Q |
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| T |
13864512 |
agtgcctccacctaagcagaaccaagcacatcaccacagtagtaaaaatggtttgtgattgtcattaacattgaaacttgaaagaggtttggtatcttag |
13864611 |
T |
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| Q |
372 |
ccnnnnnnnncattccataagtccttcatttagctcatatttaatttaattaaaggagattgagtgagctcctcaatgttaaaactattggaaatacatt |
471 |
Q |
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| T |
13864612 |
ccaaaaaaaactttccataagtccttcatttagctcatatttaatttaattaaaggagattgagtgagctcctcaatgttaaaacttttggaaatacat- |
13864710 |
T |
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| Q |
472 |
ttgttaggataacttgttagttagtatataagtcactttgttggttcatttctaccatcttcct |
535 |
Q |
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| T |
13864711 |
----------------ttagttagtatataagtcactttgttggttcatttgtaccatcttcct |
13864758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 34 - 165
Target Start/End: Original strand, 13864203 - 13864335
Alignment:
| Q |
34 |
atctttagattcaaaatctatccttttatcattagaccaaaccccaaataaacccttggagtttatagttttatt-attttaatctaaaagaactttaaa |
132 |
Q |
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| T |
13864203 |
atcttcagatccaaaacctatcattttaccattagaccaaaccgcaaataaacccttggagtttatagttttatttattttaatctaaaagaactttaaa |
13864302 |
T |
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| Q |
133 |
tactttattaattgttttaaattggtactccat |
165 |
Q |
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| T |
13864303 |
tactttattaattgttttaaattggtattccat |
13864335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 448 - 497
Target Start/End: Complemental strand, 12957543 - 12957494
Alignment:
| Q |
448 |
tgttaaaactattggaaatacattttgttaggataacttgttagttagta |
497 |
Q |
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| T |
12957543 |
tgttaaaactattggaaatacatttagttaagataacttgtttgttagta |
12957494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 388 - 439
Target Start/End: Original strand, 13873559 - 13873610
Alignment:
| Q |
388 |
ataagtccttcatttagctcatatttaatttaattaaaggagattgagtgag |
439 |
Q |
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| T |
13873559 |
ataagtccttcatttggctcatatttaatttaactaaaggaaatggagtgag |
13873610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 444 - 497
Target Start/End: Original strand, 13871355 - 13871408
Alignment:
| Q |
444 |
tcaatgttaaaactattggaaatacattttgttaggataacttgttagttagta |
497 |
Q |
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| T |
13871355 |
tcaatgttaaaactgtttgaaatacatttagttaagatatcttgtttgttagta |
13871408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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