View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15707_low_22 (Length: 220)
Name: NF15707_low_22
Description: NF15707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15707_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 18233672 - 18233883
Alignment:
| Q |
1 |
tcagtgtcatgtccggtgtctgtgtttcataaaaagaaagtaaagagtgatagaaacacttactagtgagttcatcaagccacctcttgatactctcaaa |
100 |
Q |
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| T |
18233672 |
tcagtgtcatgtccggtgtctgtgtttcatagaaagaaagtaaagagtaatagaaacacttactagtgagttcatcaagccacctcttgatactttcaaa |
18233771 |
T |
|
| Q |
101 |
cgttcctctcctactaatatcataaacaacaagagcaccaaaagcaccacgataataagcagaagtaacagctctaaacctttcttgtccagcagtatcc |
200 |
Q |
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| T |
18233772 |
cgttcctctcctactaatatcataaacaacaagagcaccaaaagcaccacgataataagcagaagtaacagctctaaacctttcttgtccagcagtatcc |
18233871 |
T |
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| Q |
201 |
cagatctgtgct |
212 |
Q |
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|||||||||||| |
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| T |
18233872 |
cagatctgtgct |
18233883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 116 - 208
Target Start/End: Complemental strand, 264440 - 264348
Alignment:
| Q |
116 |
aatatcataaacaacaagagcaccaaaagcaccacgataataagcagaagtaacagctctaaacctttcttgtccagcagtatcccagatctg |
208 |
Q |
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| T |
264440 |
aatatcataaacaataagagcaccaacagcaccacgataataagcagaagtaacagcacgaaaacgttcttgaccagcagtatcccaaatctg |
264348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 48931896 - 48931864
Alignment:
| Q |
176 |
aaacctttcttgtccagcagtatcccagatctg |
208 |
Q |
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| T |
48931896 |
aaacctttcttggccagcagtatcccagatctg |
48931864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 208
Target Start/End: Original strand, 34995353 - 34995409
Alignment:
| Q |
152 |
ataataagcagaagtaacagctctaaacctttcttgtccagcagtatcccagatctg |
208 |
Q |
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|||||| ||||||||||||||||| ||||| ||||| ||||| || ||||| ||||| |
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| T |
34995353 |
ataatatgcagaagtaacagctctgaacctctcttgcccagctgtgtcccatatctg |
34995409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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