View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15707_low_3 (Length: 453)
Name: NF15707_low_3
Description: NF15707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15707_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 15 - 435
Target Start/End: Complemental strand, 44448115 - 44447697
Alignment:
| Q |
15 |
cacagatcaatccaaatgtggctacagtaaatgaaatgtcattgtaatatacccagtcaaatgtagcctacnnnnnnnnnnncaa---ctgcatttctta |
111 |
Q |
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|||||||||||||||||| || ||| ||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||| |
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| T |
44448115 |
cacagatcaatccaaatgcggttacggtaaatgaaatgtcattgtaatataccgagtcaaatgtagcctacaaaaaaaaaaaaaaaaactgcatttctta |
44448016 |
T |
|
| Q |
112 |
acagacaaaacttatgtccattgtatggttcttcaaataaaatactcataacttgcaaagatttctcaaatccacaattttgccaacatttgtttgttac |
211 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
44448015 |
acagacgaaacttatgtccattgtatggttcttcaaataaaatactcataacttgcaaagatttctcaaatccacaattttgccaac----gtttgttac |
44447920 |
T |
|
| Q |
212 |
cacaaaaattaaaatttatgtgaagaaacatacaaaatgcaataagtttgtctttaaagatcaattcacattcaaacaaccaacagggataacatgaatc |
311 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||| |
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| T |
44447919 |
cacaaaaatttaaatttatgtgaagaaacatacaaaatgcaataagtttgtccttaaaaatcaattcacattcacacaaccaacagggataacatgaata |
44447820 |
T |
|
| Q |
312 |
aatatgcaaatttggattgatattgacttgtgttcacaggcactgtatgaaccatggacacaaacatgatattaatatgagaaaatggcacaacacaata |
411 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44447819 |
aatatgcaaatttggattgatattgacttgtgttca-tggcactgtatgaaacatggacacaaacatgatattaatatgagaaaatggcacaacacaata |
44447721 |
T |
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| Q |
412 |
taagcattcatgtcaacattgttt |
435 |
Q |
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| T |
44447720 |
taagcattcatgtcaacattgttt |
44447697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 134 - 192
Target Start/End: Original strand, 29869899 - 29869957
Alignment:
| Q |
134 |
gtatggttcttcaaataaaatactcataacttgcaaagatttctcaaatccacaatttt |
192 |
Q |
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| T |
29869899 |
gtatggttcttgacataaaatactcataactaccaatgatttctcaaatccacaatttt |
29869957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 137 - 192
Target Start/End: Complemental strand, 54126655 - 54126600
Alignment:
| Q |
137 |
tggttcttcaaataaaatactcataacttgcaaagatttctcaaatccacaatttt |
192 |
Q |
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| T |
54126655 |
tggttcttcacataaaatactaataactaccaatgatttctcaaatccacaatttt |
54126600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 188
Target Start/End: Complemental strand, 33355305 - 33355254
Alignment:
| Q |
137 |
tggttcttcaaataaaatactcataacttgcaaagatttctcaaatccacaa |
188 |
Q |
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| T |
33355305 |
tggttcttcacatcaaatactcataactaccaatgatttctcaaatccacaa |
33355254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 192
Target Start/End: Complemental strand, 19203982 - 19203922
Alignment:
| Q |
132 |
ttgtatggttcttcaaataaaatactcataacttgcaaagatttctcaaatccacaatttt |
192 |
Q |
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|||| |||||||||| ||||||||||||||||| | | ||||||||||| ||||||||| |
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| T |
19203982 |
ttgtgtggttcttcatataaaatactcataactacctattatttctcaaattcacaatttt |
19203922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 192
Target Start/End: Complemental strand, 19206392 - 19206332
Alignment:
| Q |
132 |
ttgtatggttcttcaaataaaatactcataacttgcaaagatttctcaaatccacaatttt |
192 |
Q |
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|||| |||||||||| ||||||||||||||||| | | ||||||||||| ||||||||| |
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| T |
19206392 |
ttgtgtggttcttcatataaaatactcataactacctattatttctcaaattcacaatttt |
19206332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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