View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15707_low_4 (Length: 432)
Name: NF15707_low_4
Description: NF15707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15707_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 7310091 - 7309865
Alignment:
| Q |
1 |
cggaggaggaggaggaagagaaaggtttctccaacaaaccctactccgtcgaatcgattcatgcaaatcaagattctccactgctgatgatatcgtcgac |
100 |
Q |
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| T |
7310091 |
cggaggaggaggaggaagagaaaggtttctccaacaaaccctactccgtcgaatcgattcatgcaaatcaagattctccactgctgatgatatcgtcgac |
7309992 |
T |
|
| Q |
101 |
catctccgttcaacttactctagttatcaccgaatgaagtttcaaactctccttttttcggttcgaaaagctcttcttgcttccaacaacaatcaagctt |
200 |
Q |
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| T |
7309991 |
catctccgttcaacttactctagttatcaccgaatgaagtttcaaactctccttttttcggttcgaaaagctcttcttgcttccaacaacaatcaagctt |
7309892 |
T |
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| Q |
201 |
catatcattctcgaaggagacgaagga |
227 |
Q |
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| T |
7309891 |
catatcattctcgaaggagacgaagga |
7309865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 282 - 406
Target Start/End: Complemental strand, 7309810 - 7309686
Alignment:
| Q |
282 |
atagttctcgaaagagacgtaggaatgatgaatctcaaaatgatgattctgaaaatgatcatgaaataatgagcacacaaacttcgtctgattattctta |
381 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7309810 |
atagttctcgaaagagacgtaggaatgatgaatctcaaaatgatgattctgaaaatgatcatgaaataatgagcacacaaacttcgtctgattattctta |
7309711 |
T |
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| Q |
382 |
tcgaaatagacataggattgatgat |
406 |
Q |
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| T |
7309710 |
tcgaaataggcataggattgatgat |
7309686 |
T |
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