View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15707_low_5 (Length: 430)
Name: NF15707_low_5
Description: NF15707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15707_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 20 - 274
Target Start/End: Original strand, 40889150 - 40889404
Alignment:
| Q |
20 |
gagagcacatgatttataaaggaaaaggcatgcagatgaggtctgatattgttatgatgtgagacggcaaggagcacggttatgggagttagagaaacaa |
119 |
Q |
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| T |
40889150 |
gagagcacatgatttataaaggaaaaggcatgcagatgaggtctgatattgttatgatgtgagacggcaaggagcacggttatgggagttagagaaacaa |
40889249 |
T |
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| Q |
120 |
ataaaggattttgcaatttgaattgtgatagcctaaaataactaactaaaagaaaaatactccactcacacaatcctaaacgtgggttattgttatggag |
219 |
Q |
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| T |
40889250 |
ataaaggattttgcaatatgaattgtgatagcctaaaataactaactaaaagaaaaatactccactcacacaatcctaaacgtgggttattgttatggag |
40889349 |
T |
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| Q |
220 |
gaacttgtcaatccactaacctcctaaaacgtgcacaaacacacaggctcactat |
274 |
Q |
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| T |
40889350 |
gaacttgtcaatccactaacctcctaaaacgtgcacaaacacacaggctcactat |
40889404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 339 - 420
Target Start/End: Original strand, 40889473 - 40889554
Alignment:
| Q |
339 |
acttgattctgcacacaaaagaaccttactaacccctttctacttttcaaataaaagtaaatcatataactatgctattggt |
420 |
Q |
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| T |
40889473 |
acttgattctgcacacaaaagaaccttactaacccctttctacttttcaaataaaagtaaatcatataactatgctattggt |
40889554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 73 - 223
Target Start/End: Original strand, 18368023 - 18368174
Alignment:
| Q |
73 |
atgatgtgagac-ggcaaggagcacggttatgggagttagagaaacaaataaaggattttgcaatttgaattgtgatagcctaaaataactaactaaaag |
171 |
Q |
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| T |
18368023 |
atgatgtgagactggcaagtagcacgattatgagagttagagaaacatataagggattttgcaatatgaattgagatagactaaaataactacttaagag |
18368122 |
T |
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| Q |
172 |
aaaaatactccactcacacaatcctaaacgtgggttattgttatggaggaac |
223 |
Q |
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| T |
18368123 |
aatgatactccactcaatcaatcctaaacgtgggttatggttatggaggaac |
18368174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 73 - 223
Target Start/End: Original strand, 23261277 - 23261428
Alignment:
| Q |
73 |
atgatgtgagac-ggcaaggagcacggttatgggagttagagaaacaaataaaggattttgcaatttgaattgtgatagcctaaaataactaactaaaag |
171 |
Q |
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| T |
23261277 |
atgatgtgagactggcaagtagcacgtttatgagagttagagaaacatataagggattttgcaatatgaattgagatggactaaaataactacttaagag |
23261376 |
T |
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| Q |
172 |
aaaaatactccactcacacaatcctaaacgtgggttattgttatggaggaac |
223 |
Q |
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| T |
23261377 |
aatggtactccactcaatcaatcctaaacgtgggttatggttatggaggaac |
23261428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 73 - 223
Target Start/End: Original strand, 35762742 - 35762893
Alignment:
| Q |
73 |
atgatgtgagacgg-caaggagcacggttatgggagttagagaaacaaataaaggattttgcaatttgaattgtgatagcctaaaataactaactaaaag |
171 |
Q |
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|||||||||||| | |||| |||||||||| | |||||||||||||| |||| |||||||||||| ||||||| ||| | |||||||||||| ||| || |
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| T |
35762742 |
atgatgtgagactgacaagtagcacggttacgagagttagagaaacatataagggattttgcaatatgaattgagatggactaaaataactacttaagag |
35762841 |
T |
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| Q |
172 |
aaaaatactccactcacacaatcctaaacgtgggttattgttatggaggaac |
223 |
Q |
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| T |
35762842 |
aataatactccactcaatcaatcctaaatgtgggttatggttatggaggaac |
35762893 |
T |
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