View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15707_low_6 (Length: 428)
Name: NF15707_low_6
Description: NF15707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15707_low_6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Original strand, 6226280 - 6226707
Alignment:
| Q |
1 |
tttggtttaaaaggtttgttggtaattgttttcaacttaccatgaacaaagatgaattttagtaatggtattgaaaatctgtttatgtttaggaggaatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6226280 |
tttggtttaaaaggtttgttggtaattgttttcaacttaccatgaacaaagatgaattttagtaatggtattgaaaatctgtttatgtttaggaggaatt |
6226379 |
T |
|
| Q |
101 |
tcatgtttggggttgggaatttttggattggctcagcactaatttcactaactttctctgaatttggttcacacatttctgacattatgttaagctttct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6226380 |
tcatgtttggggttgggaatttttggattggctcagcactaatttcaccaactttctctgaatttggttcacacatttctgacattatgttaagctttct |
6226479 |
T |
|
| Q |
201 |
ttcattcattcatatagtnnnnnnntgtgcttttacactaagtgaatgaactttcaaagaaggattcaataattttcgtgtaggtagcttattctcgagt |
300 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6226480 |
ttcattcattcatatagtaaaaaaatgtgcttttacactaagtgaatgaactttcaaagaaggattcaataattttcgtgtaggtagcttattctcgagt |
6226579 |
T |
|
| Q |
301 |
catgactgtttgagagctaatttgtcctggtataaatgttagcaaaatgcgcatactatataagttagttgggnnnnnnnntaccgttttggcgtgtttg |
400 |
Q |
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| T |
6226580 |
catgactgtttgagagctaatttgtcctggtataaatgttagcaaaatgcgcatactatataagttagttaggcaaaaaaatactgttttggtgtgtttg |
6226679 |
T |
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| Q |
401 |
ggctagcagctttcacaactttttcaca |
428 |
Q |
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| T |
6226680 |
ggctagcagctttcacaactttttcaca |
6226707 |
T |
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Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 57 - 123
Target Start/End: Original strand, 1786533 - 1786599
Alignment:
| Q |
57 |
ttttagtaatggtattgaaaatctgtttatgtttaggaggaatttcatgtttggggttgggaatttt |
123 |
Q |
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| T |
1786533 |
ttttagtaatggtattgaaaatctgtttatgtttaggaggaatttcatgtttggggttgggaatttt |
1786599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 123 - 209
Target Start/End: Original strand, 1786628 - 1786710
Alignment:
| Q |
123 |
ttggattggctcagcactaatttcactaactttctctgaatttggttcacacatttctgacattatgttaagctttctttcattcat |
209 |
Q |
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| T |
1786628 |
ttggattggctcagcactaatttcact----ttctctgaaattggtccacacatctctgacgttatgttaaactttctttcattcat |
1786710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 297 - 370
Target Start/End: Original strand, 37059095 - 37059168
Alignment:
| Q |
297 |
gagtcatgactgtttgagagctaatttgtcctggtataaatgttagcaaaatgcgcatactatataagttagtt |
370 |
Q |
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| T |
37059095 |
gagtcatgactctttgagatctaatttgtcctggtataaatgttagcaaaatgtgcatactatataaattagtt |
37059168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 132 - 198
Target Start/End: Complemental strand, 40178994 - 40178928
Alignment:
| Q |
132 |
ctcagcactaatttcactaactttctctgaatttggttcacacatttctgacattatgttaagcttt |
198 |
Q |
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| T |
40178994 |
ctcagcactaatttcactagctttctctgaatttggttcacacatctctgacattatgctaaacttt |
40178928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 199 - 286
Target Start/End: Complemental strand, 40178901 - 40178815
Alignment:
| Q |
199 |
ctttcattcattcatatagtnnnnnnntgtgcttttacactaagtgaatgaactttcaaagaaggattcaataattttcgtgtaggta |
286 |
Q |
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||||||||||||||||||| ||||||||||| |||| ||||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
40178901 |
ctttcattcattcatatagcaaaaaaatgtgcttttactctaa-tgaatgaacttccaaagaaggattcaatatttttcgtgtaggta |
40178815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 158 - 261
Target Start/End: Complemental strand, 4804273 - 4804170
Alignment:
| Q |
158 |
ctgaatttggttcacacatttctgacattatgttaagctttctttcattcattcatatagtnnnnnnntgtgcttttacactaagtgaatgaactttcaa |
257 |
Q |
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|||||||| ||| |||||| ||| |||||||||||| | |||||||||||||||||||||| | |||||| || |||||||||||||||||||| |
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| T |
4804273 |
ctgaatttagtttacacatctctaacattatgttaaaccttctttcattcattcatatagtaaaaatatctgctttaactctaagtgaatgaactttcaa |
4804174 |
T |
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| Q |
258 |
agaa |
261 |
Q |
| |
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|||| |
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| T |
4804173 |
agaa |
4804170 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 85
Target Start/End: Complemental strand, 8745218 - 8745190
Alignment:
| Q |
57 |
ttttagtaatggtattgaaaatctgttta |
85 |
Q |
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| T |
8745218 |
ttttagtaatggtattgaaaatctgttta |
8745190 |
T |
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