View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15707_low_9 (Length: 383)

Name: NF15707_low_9
Description: NF15707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15707_low_9
NF15707_low_9
[»] chr8 (11 HSPs)
chr8 (85-374)||(2051718-2052007)
chr8 (100-370)||(2055589-2055860)
chr8 (197-370)||(2058891-2059064)
chr8 (204-374)||(2029704-2029874)
chr8 (204-374)||(1948159-1948329)
chr8 (207-373)||(2034625-2034791)
chr8 (219-374)||(2047958-2048113)
chr8 (231-373)||(10769378-10769520)
chr8 (219-339)||(2038715-2038835)
chr8 (106-153)||(2058840-2058887)
chr8 (243-330)||(2023297-2023384)
[»] chr4 (1 HSPs)
chr4 (171-333)||(48904980-48905142)
[»] chr2 (3 HSPs)
chr2 (244-332)||(28735007-28735095)
chr2 (252-332)||(28699507-28699587)
chr2 (235-296)||(28742176-28742237)


Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 85 - 374
Target Start/End: Original strand, 2051718 - 2052007
Alignment:
Q  85 ataatcatgtgtcaccaggatcgatcgtgattgaaccaatattaaaccatgacctaaaggtctaattgattcgatttttcgtcaggtttttaagatatta 184  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  2051718 ataatcatgtgtcaccaggatcgatcgtgtttgaaccaatattaaaccatgacctaaaggtctaattgattcgatttttggtcaggtttttaagatatta 2051817  T
Q  185 attggaaggatcgataatggatgtaaacatataactaattatatgtttgtttgaattgtagcttattacaaatgacaaattcaagagtgttgtacataga 284  Q
    |||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2051818 attggaaggatcgataatagatgtaaacatacaactaattatttgtttgtttgaattgtagcttattacaaatgacaaattcaagagtgttgtacataga 2051917  T
Q  285 gtacttgcaaatcaagttggcccaagaatatccgttgcatgctttttctccacagcacttaaagcatcttcaaagctctatggacctatg 374  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2051918 gtacttgcaaatcaagttggtccaagaatatccgttgcatgctttttctccacagcacttaaagcatcttcaaagctctatggacctatg 2052007  T

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Target: chr8; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 100 - 370
Target Start/End: Original strand, 2055589 - 2055860
Alignment:
Q  100 caggatcgatcgtgattgaaccaatattaaaccatgacctaaaggtctaattgattcgatttttcgtcaggtttttaagatattaattggaaggatcgat 199  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| || |||||||||||||||||||| ||| |||||||| |    
T  2055589 caggttcgatcgtgattgaaccaatattaaaccatgaccttaaggtctcattgattcgattcttggtcaggtttttaagatattatttgaaaggatcggt 2055688  T
Q  200 -aatggatgtaaacatataactaattatatgtttgtttgaattgtagcttattacaaatgacaaattcaagagtgttgtacatagagtacttgcaaatca 298  Q
     ||| |||||||||| |||||||||| | |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||      
T  2055689 taatagatgtaaacacataactaattctttgtttgtttgaactgtagcttataacaaatgacaaattcaagagtgttgtacatagagtacttgccaatac 2055788  T
Q  299 agttggcccaagaatatccgttgcatgctttttctccacagcacttaaagcatcttcaaagctctatggacc 370  Q
    |||||| ||||||||||| ||||||||||||||||| || | |||||||||||| |||||||||||||||||    
T  2055789 agttggtccaagaatatctgttgcatgctttttctcgacgggacttaaagcatcctcaaagctctatggacc 2055860  T

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Target: chr8; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 197 - 370
Target Start/End: Original strand, 2058891 - 2059064
Alignment:
Q  197 gataatggatgtaaacatataactaattatatgtttgtttgaattgtagcttattacaaatgacaaattcaagagtgttgtacatagagtacttgcaaat 296  Q
    |||||| | |||||||||||| |||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||    
T  2058891 gataataggtgtaaacatatatctaattatttgattgtttgaattgtagcttataacaaatgacaaattcaagagtgttgtacatagagtaattgccaat 2058990  T
Q  297 caagttggcccaagaatatccgttgcatgctttttctccacagcacttaaagcatcttcaaagctctatggacc 370  Q
    |||||||| ||||||||||| |||||||||||||||||||||| ||| |||||||||||||| |||||||||||    
T  2058991 caagttggtccaagaatatctgttgcatgctttttctccacaggactcaaagcatcttcaaaactctatggacc 2059064  T

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Target: chr8; HSP #4
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 204 - 374
Target Start/End: Original strand, 2029704 - 2029874
Alignment:
Q  204 gatgtaaacatataactaattatatgtttgtttgaattgtagcttattacaaatgacaaattcaagagtgttgtacatagagtacttgcaaatcaagttg 303  Q
    ||||||| ||||||||||||||| |||||||||   ||||||||||| |||||||| | |||||||||||||| |||||||||| |||||||||||||||    
T  2029704 gatgtaagcatataactaattatttgtttgtttaccttgtagcttataacaaatgatagattcaagagtgttgaacatagagtagttgcaaatcaagttg 2029803  T
Q  304 gcccaagaatatccgttgcatgctttttctccacagcacttaaagcatcttcaaagctctatggacctatg 374  Q
    | ||||||||||| ||||||||||||||||||||||  ||||   |||| |||||||||||||||||||||    
T  2029804 gtccaagaatatctgttgcatgctttttctccacaggccttaggccatcgtcaaagctctatggacctatg 2029874  T

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Target: chr8; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 204 - 374
Target Start/End: Complemental strand, 1948329 - 1948159
Alignment:
Q  204 gatgtaaacatataactaattatatgtttgtttgaattgtagcttattacaaatgacaaattcaagagtgttgtacatagagtacttgcaaatcaagttg 303  Q
    |||| ||||||||| |||||||| |  |||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  1948329 gatgcaaacatatagctaattattttcttgtttgatttgtagcttataacaaatgacaaattcaagagtgttgaacatagagtagttgcaaatcaagttg 1948230  T
Q  304 gcccaagaatatccgttgcatgctttttctccacagcacttaaagcatcttcaaagctctatggacctatg 374  Q
    | ||||||||||| |||||||||||||| || ||||  ||||   |||| |||||||||||||||||||||    
T  1948229 gtccaagaatatctgttgcatgctttttttcaacaggtcttaggccatcgtcaaagctctatggacctatg 1948159  T

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Target: chr8; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 207 - 373
Target Start/End: Original strand, 2034625 - 2034791
Alignment:
Q  207 gtaaacatataactaattatatgtttgtttgaattgtagcttattacaaatgacaaattcaagagtgttgtacatagagtacttgcaaatcaagttggcc 306  Q
    |||| ||||||||||||||| |||||| || ||||||||||||| |||||||||| |||||||||||||| ||| |||||| |||||||| |||||||||    
T  2034625 gtaagcatataactaattatttgtttgcttcaattgtagcttataacaaatgacagattcaagagtgttgaacacagagtagttgcaaatgaagttggcc 2034724  T
Q  307 caagaatatccgttgcatgctttttctccacagcacttaaagcatcttcaaagctctatggacctat 373  Q
    |||||||||| || ||||||||||||| |||||   |||   |||| ||||||||||||||||||||    
T  2034725 caagaatatctgtggcatgctttttctgcacaggtattaggtcatcctcaaagctctatggacctat 2034791  T

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Target: chr8; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 219 - 374
Target Start/End: Original strand, 2047958 - 2048113
Alignment:
Q  219 ctaattatatgtttgtttgaattgtagcttattacaaatgacaaattcaagagtgttgtacatagagtacttgcaaatcaagttggcccaagaatatccg 318  Q
    |||||||| |||||||||   ||||||||||| |||||||||| |||||||||| ||| ||| | ||||||||||||| || |||| ||||||||||| |    
T  2047958 ctaattatttgtttgtttatcttgtagcttataacaaatgacagattcaagagttttgaacacaaagtacttgcaaataaaattggtccaagaatatctg 2048057  T
Q  319 ttgcatgctttttctccacagcacttaaagcatcttcaaagctctatggacctatg 374  Q
    | ||| |||||||||| ||||    ||   ||||||||||||||||||||||||||    
T  2048058 tagcaagctttttctctacaggtaataggtcatcttcaaagctctatggacctatg 2048113  T

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Target: chr8; HSP #8
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 231 - 373
Target Start/End: Original strand, 10769378 - 10769520
Alignment:
Q  231 ttgtttgaattgtagcttattacaaatgacaaattcaagagtgttgtacatagagtacttgcaaatcaagttggcccaagaatatccgttgcatgctttt 330  Q
    ||||||||| |||||||||| ||||||||||||||||||||||| |  || ||||| ||||||||| | ||||| ||||||||||| |||||||| ||||    
T  10769378 ttgtttgaagtgtagcttataacaaatgacaaattcaagagtgtggagcacagagttcttgcaaataatgttggtccaagaatatctgttgcatgttttt 10769477  T
Q  331 tctccacagcacttaaagcatcttcaaagctctatggacctat 373  Q
    ||| ||| |  | ||   |||| ||||||||||||||||||||    
T  10769478 tctgcaccggtcataggtcatcctcaaagctctatggacctat 10769520  T

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Target: chr8; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 219 - 339
Target Start/End: Original strand, 2038715 - 2038835
Alignment:
Q  219 ctaattatatgtttgtttgaattgtagcttattacaaatgacaaattcaagagtgttgtacatagagtacttgcaaatcaagttggcccaagaatatccg 318  Q
    ||||||||  ||||||||   ||||||||||| |||||||||| |||||||||||||| ||| ||||||||||| ||| || |||| ||  ||||||| |    
T  2038715 ctaattattagtttgtttaccttgtagcttataacaaatgacagattcaagagtgttgaacacagagtacttgcgaataaaattggtccgcgaatatctg 2038814  T
Q  319 ttgcatgctttttctccacag 339  Q
    | |||||||||||||||||||    
T  2038815 tagcatgctttttctccacag 2038835  T

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Target: chr8; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 106 - 153
Target Start/End: Original strand, 2058840 - 2058887
Alignment:
Q  106 cgatcgtgattgaaccaatattaaaccatgacctaaaggtctaattga 153  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||    
T  2058840 cgatcgtgattgaaccaatattaaaccatgacctaaaggtctcattga 2058887  T

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Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 243 - 330
Target Start/End: Original strand, 2023297 - 2023384
Alignment:
Q  243 tagcttattacaaatgacaaattcaagagtgttgtacatagagtacttgcaaatcaagttggcccaagaatatccgttgcatgctttt 330  Q
    ||||||||||||||||||||||||||||||||||  || |||||  | |||||||| || || |||||| |||| |||||| ||||||    
T  2023297 tagcttattacaaatgacaaattcaagagtgttgagcacagagtggtagcaaatcatgtcggtccaagagtatcagttgcaagctttt 2023384  T

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Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 171 - 333
Target Start/End: Complemental strand, 48905142 - 48904980
Alignment:
Q  171 tttttaagatattaattggaaggatcgataatggatgtaaacatataactaattatatgtttgtttgaattgtagcttattacaaatgacaaattcaaga 270  Q
    ||||||||||||| ||| ||||| || |||||  |||||| |||||   ||||||| |||  || ||||| | ||||||| ||||||||||| || ||||    
T  48905142 tttttaagatattgatttgaagggtcaataatatatgtaagcatatcggtaattatttgtacgtatgaatcgcagcttataacaaatgacaagtttaaga 48905043  T
Q  271 gtgttgtacatagagtacttgcaaatcaagttggcccaagaatatccgttgcatgctttttct 333  Q
    |||||| ||| |||||| |||||||||||||||| ||||||||||| | ||||||||||||||    
T  48905042 gtgttgaacacagagtagttgcaaatcaagttggtccaagaatatctgctgcatgctttttct 48904980  T

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Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 244 - 332
Target Start/End: Complemental strand, 28735095 - 28735007
Alignment:
Q  244 agcttattacaaatgacaaattcaagagtgttgtacatagagtacttgcaaatcaagttggcccaagaatatccgttgcatgctttttc 332  Q
    ||||||| |||||||| |||||||||||||||| |||||||||||| |||||| |  |||| ||||||||||| |||||||||||||||    
T  28735095 agcttataacaaatgataaattcaagagtgttgaacatagagtactggcaaatgacattggtccaagaatatctgttgcatgctttttc 28735007  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 252 - 332
Target Start/End: Complemental strand, 28699587 - 28699507
Alignment:
Q  252 acaaatgacaaattcaagagtgttgtacatagagtacttgcaaatcaagttggcccaagaatatccgttgcatgctttttc 332  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||    |||| ||||||||||| |||||||||||||||    
T  28699587 acaaatgacaaattcaagagtgttgaacatagagtactggcaaatggcattggtccaagaatatctgttgcatgctttttc 28699507  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 296
Target Start/End: Complemental strand, 28742237 - 28742176
Alignment:
Q  235 ttgaattgtagcttattacaaatgacaaattcaagagtgttgtacatagagtacttgcaaat 296  Q
    ||||| || ||||||| |||||||||| ||||||||||||||  || |||||||| ||||||    
T  28742237 ttgaactgcagcttataacaaatgacagattcaagagtgttgagcacagagtactagcaaat 28742176  T

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