View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15708_high_1_N (Length: 392)

Name: NF15708_high_1_N
Description: NF15708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15708_high_1_N
NF15708_high_1_N
[»] chr5 (9 HSPs)
chr5 (29-363)||(13447062-13447396)
chr5 (29-351)||(13419511-13419833)
chr5 (29-296)||(13426402-13426669)
chr5 (31-308)||(13413168-13413445)
chr5 (157-277)||(13388988-13389108)
chr5 (157-277)||(13454143-13454263)
chr5 (156-277)||(13385167-13385288)
chr5 (29-103)||(13454015-13454089)
chr5 (31-110)||(13393562-13393641)
[»] chr4 (2 HSPs)
chr4 (49-123)||(47601353-47601427)
chr4 (230-266)||(47601534-47601570)


Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 29 - 363
Target Start/End: Original strand, 13447062 - 13447396
Alignment:
Q  29 catcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggggaaacctccataggtgatagtgccaccacgagactt 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  13447062 catcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccatcacgagactt 13447161  T
Q  129 accattgaatgtttgagtatatttggtgcagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctact 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  13447162 accattgaatgtttgagtatatttggtgcagtaattctcaatatcgtcggcacaattttcgcaagaacgacatgaatcaaccatgtatcccacccctact 13447261  T
Q  229 ctgtctccaactttaaacttttttactttgcttcccacctctgttactacacccgtaagttcgtgcctatatttattacattagttataaccaaattgag 328  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  13447262 ttgtctccaactttaaacttttttactttgcttcccacctctgttactacacccgtaagttcgtgcctatatttattacattagttataacgaaattgag 13447361  T
Q  329 caattattttctactcgtttcttttgattgactca 363  Q
    |||||||||||||||||||||||||||||||||||    
T  13447362 caattattttctactcgtttcttttgattgactca 13447396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 29 - 351
Target Start/End: Original strand, 13419511 - 13419833
Alignment:
Q  29 catcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggggaaacctccataggtgatagtgccaccacgagactt 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||  |||||| ||||| ||||    
T  13419511 catcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagtaacctccatatgtgacggtgccatcacgatactt 13419610  T
Q  129 accattgaatgtttgagtatatttggtgcagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctact 228  Q
      ||    ||||    ||| || | | |||||||||||||| |||||| ||||||||||  || ||||||||||||||||||||||||||||| || |||    
T  13419611 tgcaccacatgtgactgtaaatgttgggcagtaattctcaagatcgtcagcacaattttggcatgaacgacatgaatcaaccatgtatcccacaccaact 13419710  T
Q  229 ctgtctccaactttaaacttttttactttgcttcccacctctgttactacacccgtaagttcgtgcctatatttattacattagttataaccaaattgag 328  Q
     ||||||||||||||||||||| |||||||||||| ||||| ||||||| ||||| |||||| |||||  |||||||| || | |||||| ||||||||     
T  13419711 ttgtctccaactttaaacttttctactttgcttccaacctcggttactatacccgcaagttcatgcctgcatttattaaataaattataaacaaattgaa 13419810  T
Q  329 caattattttctactcgtttctt 351  Q
    ||||||||| |||||| ||||||    
T  13419811 caattatttactactcatttctt 13419833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 29 - 296
Target Start/End: Original strand, 13426402 - 13426669
Alignment:
Q  29 catcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggggaaacctccataggtgatagtgccaccacgagactt 128  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||   |||||||||| ||||   ||||| ||||| ||||    
T  13426402 catcaagaggtaagctatcaggaatgcgaatcacaaagtgctcatctgcaaccattgagtcggaataacctccatatgtgacgctgccatcacgatactt 13426501  T
Q  129 accattgaatgtttgagtatatttggtgcagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctact 228  Q
    | ||    ||||    || | || || |||||||||||||| ||| || ||||||||||| || ||||||||||||||||||||||||||||| ||||||    
T  13426502 agcaccacatgtaactgtttgttgggggcagtaattctcaagatcttccgcacaattttcgcatgaacgacatgaatcaaccatgtatcccactcctact 13426601  T
Q  229 ctgtctccaactttaaacttttttactttgcttcccacctctgttactacacccgtaagttcgtgcct 296  Q
     ||||||||||||||||||||| |||||||||||| ||||||||||| | ||||| |||||| |||||    
T  13426602 ttgtctccaactttaaacttttctactttgcttccaacctctgttacaatacccgcaagttcatgcct 13426669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 31 - 308
Target Start/End: Original strand, 13413168 - 13413445
Alignment:
Q  31 tcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggggaaacctccataggtgatagtgccaccacgagacttac 130  Q
    |||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||  || ||| ||||| ||||      
T  13413168 tcaagaggtatgttgtcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagtaacctccataagtgacggttccatcacgatacttgg 13413267  T
Q  131 cattgaatgtttgagtatatttggtgcagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctactct 230  Q
    ||    ||||      | |||||| |||||||||||||| || |||   ||||| ||  || || ||||||||||||| || ||| || || |||||| |    
T  13413268 caccacatgtgactacaaatttggggcagtaattctcaagattgtcattacaatcttggcatgatcgacatgaatcaatcaagtagccaacacctacttt 13413367  T
Q  231 gtctccaactttaaacttttttactttgcttcccacctctgttactacacccgtaagttcgtgcctatatttattaca 308  Q
    |||||||||||||||||| |  ||||||||||| || |||||||||| ||||| ||| || ||||| |||||||||||    
T  13413368 gtctccaactttaaacttctccactttgcttcctacttctgttactatacccgcaagctcatgcctgtatttattaca 13413445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 157 - 277
Target Start/End: Complemental strand, 13389108 - 13388988
Alignment:
Q  157 cagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctactctgtctccaactttaaacttttttactt 256  Q
    |||||||| |||| || |||  ||||||||| ||| || |||||||||||||||||||| || || |||||| |||||||||| || ||||||| |||||    
T  13389108 cagtaattttcaagattgtcaacacaattttgacatgatcgacatgaatcaaccatgtagccaacacctactttgtctccaacattgaacttttctactt 13389009  T
Q  257 tgcttcccacctctgttacta 277  Q
    |||||||||||| ||| ||||    
T  13389008 tgcttcccacctttgtcacta 13388988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 157 - 277
Target Start/End: Original strand, 13454143 - 13454263
Alignment:
Q  157 cagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctactctgtctccaactttaaacttttttactt 256  Q
    ||||||||||||| ||  ||  ||||||||| ||| ||  |||| |||||||||| | ||||||| |||||||||||||||||||| |||||||| ||||    
T  13454143 cagtaattctcaagattatcaacacaattttgacatgagtgacaagaatcaaccaagcatcccacacctactctgtctccaactttgaactttttcactt 13454242  T
Q  257 tgcttcccacctctgttacta 277  Q
    |||||||||| ||||| ||||    
T  13454243 tgcttcccacttctgtaacta 13454263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 156 - 277
Target Start/End: Complemental strand, 13385288 - 13385167
Alignment:
Q  156 gcagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctactctgtctccaactttaaacttttttact 255  Q
    ||||||||| |||| || |||  ||||||||| ||| || |||||||||||||  ||||| || || |||||| |||||||||| || ||||||| ||||    
T  13385288 gcagtaattttcaagattgtcaacacaattttgacacgatcgacatgaatcaattatgtagccaacacctactttgtctccaacattgaacttttctact 13385189  T
Q  256 ttgcttcccacctctgttacta 277  Q
    ||||||||||||| ||| ||||    
T  13385188 ttgcttcccacctttgtcacta 13385167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 103
Target Start/End: Original strand, 13454015 - 13454089
Alignment:
Q  29 catcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggggaaacctccat 103  Q
    |||||||||||||   ||| |||||||||| ||||||||||||||| | |||||||||||| | ||| |||||||    
T  13454015 catcaagaggtaactgatctggaatgcgaaacacaaagtgctcgtcggaaaccattgagtcagagaagcctccat 13454089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 31 - 110
Target Start/End: Complemental strand, 13393641 - 13393562
Alignment:
Q  31 tcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggggaaacctccataggtgat 110  Q
    ||||| ||||||| |||||||||| |||  | ||||||||| ||||||||||||||||| | | | |||||||| |||||    
T  13393641 tcaagtggtaagccatcaggaatgtgaactataaagtgctcatctgcaaccattgagtcagagtaccctccatatgtgat 13393562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 123
Target Start/End: Original strand, 47601353 - 47601427
Alignment:
Q  49 ggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggggaaacctccataggtgatagtgccaccacga 123  Q
    |||||| ||| |||||||||||||||| ||||||||||||| | | ||||||| || ||| | |||||| |||||    
T  47601353 ggaatgtgaaccacaaagtgctcgtctacaaccattgagtcagagtaacctccgtatgtggtggtgccatcacga 47601427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 266
Target Start/End: Original strand, 47601534 - 47601570
Alignment:
Q  230 tgtctccaactttaaacttttttactttgcttcccac 266  Q
    ||||||||||||| ||||||| |||||||||||||||    
T  47601534 tgtctccaactttgaacttttctactttgcttcccac 47601570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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