View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15708_high_2 (Length: 387)

Name: NF15708_high_2
Description: NF15708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15708_high_2
NF15708_high_2
[»] chr4 (3 HSPs)
chr4 (123-364)||(34832318-34832570)
chr4 (1-52)||(34832641-34832692)
chr4 (270-324)||(30504955-30505009)
[»] chr8 (2 HSPs)
chr8 (123-364)||(28951010-28951263)
chr8 (1-52)||(28951334-28951385)
[»] chr2 (2 HSPs)
chr2 (233-364)||(4234035-4234166)
chr2 (273-322)||(38886551-38886600)


Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 123 - 364
Target Start/End: Complemental strand, 34832570 - 34832318
Alignment:
Q  123 gcagaaatcgaactcagtactttctggactttcaacactcacacacacgacgcaccac-----------caatctttatttagttttttaactttattat 211  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||           |||||||||||||| ||||||||||||||||    
T  34832570 gcagaaatcgaacacagtactttctggactttcaacactcacacacatgacgcaccactgacgcaccaccaatctttatttagctttttaactttattat 34832471  T
Q  212 tgattgtgtgtgaatgattgaatagggtggaatcaatgaactgccgggtttaccggcaggagtgaagtttgatccgaatgatcaagagatacttcagcat 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34832470 tgattgtgtgtgaatgattgaatagggtggaatcaatgaactgccgggtttaccggcaggagtgaagtttgatccgaatgatcaagagatacttcagcat 34832371  T
Q  312 ttggaagcaaaggttctgtttgatgtgcccaaacttcatcctcttattgatga 364  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34832370 ttggaagcaaaggttctgtttgatgtgcccaaacttcatcctcttattgatga 34832318  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 34832692 - 34832641
Alignment:
Q  1 cgaaccctaacttgcccctcatgtggccataacattgaatttcaagatcagg 52  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34832692 cgaaccctaacttgcccctcatgtggccataacattgaatttcaagatcagg 34832641  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 324
Target Start/End: Original strand, 30504955 - 30505009
Alignment:
Q  270 ggagtgaagtttgatccgaatgatcaagagatacttcagcatttggaagcaaagg 324  Q
    ||||||||||||||||| |  ||||||||||| ||| | ||||||||||||||||    
T  30504955 ggagtgaagtttgatcctacagatcaagagattcttgaacatttggaagcaaagg 30505009  T

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Target: chr8 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 123 - 364
Target Start/End: Complemental strand, 28951263 - 28951010
Alignment:
Q  123 gcagaaatcgaactcagtactttctggactttcaacactcacacacacgacgcacca------------ccaatctttatttagttttttaactttatta 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||            ||||||||||||||||||||||||||||| |    
T  28951263 gcagaaatcgaactcagtactttctggactttcaacactcacacacatgacgcaccaatcactaatgctccaatctttatttagttttttaactttataa 28951164  T
Q  211 ttgattgtgtgtgaatgattgaatagggtggaatcaatgaactgccgggtttaccggcaggagtgaagtttgatccgaatgatcaagagatacttcagca 310  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28951163 ttggttgtgtgtgaatgattgaatagggtggaatcaatgaactgccgggtttaccggcaggagtgaagtttgatccgaatgatcaagagatacttcagca 28951064  T
Q  311 tttggaagcaaaggttctgtttgatgtgcccaaacttcatcctcttattgatga 364  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28951063 tttggaagcaaaggttctgtttgatgtgcccaaacttcatcctcttattgatga 28951010  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 28951385 - 28951334
Alignment:
Q  1 cgaaccctaacttgcccctcatgtggccataacattgaatttcaagatcagg 52  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  28951385 cgaactctaacttgcccctcatgtggccataacattgaatttcaagatcagg 28951334  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 233 - 364
Target Start/End: Original strand, 4234035 - 4234166
Alignment:
Q  233 atagggtggaatcaatgaactgccgggtttaccggcaggagtgaagtttgatccgaatgatcaagagatacttcagcatttggaagcaaaggttctgttt 332  Q
    |||||||||| | |||||| ||||||| ||||| || |||||||| ||||| || | ||||  ||| |||||  ||||||| |||||||| ||  ||| |    
T  4234035 atagggtggagttaatgaattgccggggttaccagctggagtgaaatttgacccaagtgatgtagaaatactagagcatttagaagcaaaagtgatgtct 4234134  T
Q  333 gatgtgcccaaacttcatcctcttattgatga 364  Q
     ||||  |||| |||||||| |||||||||||    
T  4234135 aatgtctccaagcttcatccacttattgatga 4234166  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 322
Target Start/End: Original strand, 38886551 - 38886600
Alignment:
Q  273 gtgaagtttgatccgaatgatcaagagatacttcagcatttggaagcaaa 322  Q
    |||||||||||||| | |||||||||||| ||| | ||||||||||||||    
T  38886551 gtgaagtttgatccaactgatcaagagattcttgaacatttggaagcaaa 38886600  T

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