View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15708_high_3 (Length: 340)
Name: NF15708_high_3
Description: NF15708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15708_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 41170305 - 41170002
Alignment:
| Q |
1 |
ccacattcatataaaattagaacacagccaacnnnnnnn-gctagggtttggtaattgaagtgttacctcttatgtgcttgaacgaatttggagtttttg |
99 |
Q |
| |
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| T |
41170305 |
ccacattcatataaaattagaacacaaccaacaaaaaaaagctagggtttggtaattgaagtgttacctcttatgtgcttgaacgaatttggagtttttg |
41170206 |
T |
|
| Q |
100 |
gcatcttcctctgcgaaaaagcaacaaaaataaaatcagattcagaagaagnnnnnnnntgatttgaaaatgaagtaataaatttaccactgagaccaag |
199 |
Q |
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| T |
41170205 |
gcatcttcctctgcgaaaaagcaagaaaaataaaatcagattcagaagaa---aaaaaatgatttgaaaatgaagtaataaatttaccactgagaccaag |
41170109 |
T |
|
| Q |
200 |
agaaaacttggtgactagagctccagttacagcgaatccaaccaagaaaggccaattcctgttccattctctcttgaagaaaactggccatgcatcgaat |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41170108 |
ggaaaacttggtgactagagctccagttacagcgaatccaaccaagaaaggccaattcctgttccattctctcttgaagaaaactggccatgcatcgaat |
41170009 |
T |
|
| Q |
300 |
ttcctca |
306 |
Q |
| |
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||||||| |
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|
| T |
41170008 |
ttcctca |
41170002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 192 - 298
Target Start/End: Complemental strand, 23334988 - 23334882
Alignment:
| Q |
192 |
agaccaagagaaaacttggtgactagagctccagttacagcgaatccaaccaagaaaggccaattcctgttccattctctcttgaagaaaactggccatg |
291 |
Q |
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||||||||||| || |||||||| |||||||| || || ||||||||||| | ||| |||||| | | ||||||||||||||||||||||||||||||| |
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| T |
23334988 |
agaccaagagagaatttggtgacaagagctccggtgacggcgaatccaacgaggaatggccaagtacgtttccattctctcttgaagaaaactggccatg |
23334889 |
T |
|
| Q |
292 |
catcgaa |
298 |
Q |
| |
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|||||| |
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|
| T |
23334888 |
gatcgaa |
23334882 |
T |
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