View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15708_low_2 (Length: 263)
Name: NF15708_low_2
Description: NF15708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15708_low_2 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 22 - 246
Target Start/End: Complemental strand, 14589419 - 14589195
Alignment:
| Q |
22 |
ttgttcctgtaaatacttcctttctcgtctactattaccaacctcaatgttttagcaacacaatccctattaatggccccatctggctcactccttggta |
121 |
Q |
| |
|
|||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
14589419 |
ttgttcctgtaaatacttccttcctcatccactattaccaacctcaatgttttagcaacacagtccctattaatggccccatctggctcactccttggta |
14589320 |
T |
|
| Q |
122 |
cctcaacagccactttcttttcttctagtactcttgaaaacaaacattggtcaagtaaataaggcaatgtcacaagaacatgcccaagataaagcatttc |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14589319 |
cctcaacagccactttcttttcttctagtactcttgcaaacaaacattggtcaagtaaataaggcaatgtcacaagaacatgcccaagataaagcatttc |
14589220 |
T |
|
| Q |
222 |
aaagactgaacttggaccacaatga |
246 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
14589219 |
aaagactgaacttggaccacaatga |
14589195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 22 - 246
Target Start/End: Complemental strand, 14623077 - 14622853
Alignment:
| Q |
22 |
ttgttcctgtaaatacttcctttctcgtctactattaccaacctcaatgttttagcaacacaatccctattaatggccccatctggctcactccttggta |
121 |
Q |
| |
|
|||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
14623077 |
ttgttcctgtaaatacttccttcctcatccactattaccaacctcaatgttttagcaacacagtccctattaatggccccatctggctcactccttggta |
14622978 |
T |
|
| Q |
122 |
cctcaacagccactttcttttcttctagtactcttgaaaacaaacattggtcaagtaaataaggcaatgtcacaagaacatgcccaagataaagcatttc |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
14622977 |
cctcaacagccactttcttttcttctagtactcttgcaaacaaacattggtcaagtaaataaggcaatgtcacaagaacatgcccaagatgaagcatttc |
14622878 |
T |
|
| Q |
222 |
aaagactgaacttggaccacaatga |
246 |
Q |
| |
|
|| ||||||||| |||||||||||| |
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|
| T |
14622877 |
aatgactgaactgggaccacaatga |
14622853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 22 - 246
Target Start/End: Complemental strand, 12846974 - 12846750
Alignment:
| Q |
22 |
ttgttcctgtaaatacttcctttctcgtctactattaccaacctcaatgttttagcaacacaatccctattaatggccccatctggctcactccttggta |
121 |
Q |
| |
|
||||||||||||||| |||||| | || | |||| | |||||||||||| || ||| | |||||| ||| || |||||| |||||| ||||| | |
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|
| T |
12846974 |
ttgttcctgtaaataattccttcggcatccattattgctaacctcaatgttagggctacaaagtccctagtaaaggacccatcctcctcacttcttggaa |
12846875 |
T |
|
| Q |
122 |
cctcaacagccactttcttttcttctagtactcttgaaaacaaacattggtcaagtaaataaggcaatgtcacaagaacatgcccaagataaagcatttc |
221 |
Q |
| |
|
|||||| |||||||||||||| ||||| ||||||||||||||||||| || || |||||||||||||| ||||||||||| |||| || ||| | || |
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|
| T |
12846874 |
cctcaatggccactttcttttcagctagttctcttgaaaacaaacattgatctagcaaataaggcaatgtaacaagaacatgtccaaaatggagcttctc |
12846775 |
T |
|
| Q |
222 |
aaagactgaacttggaccacaatga |
246 |
Q |
| |
|
|| |||||||| || |||||||||| |
|
|
| T |
12846774 |
aatgactgaacctgaaccacaatga |
12846750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 52 - 234
Target Start/End: Original strand, 51369487 - 51369669
Alignment:
| Q |
52 |
actattaccaacctcaatgttttagcaacacaatccctattaatggccccatctggctcactccttggtacctcaacagccactttcttttcttctagta |
151 |
Q |
| |
|
||||||||||||||||||||||| || ||| | |||||| ||| || ||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
51369487 |
actattaccaacctcaatgttttggctacagagtccctagtaaaggacccatcttgctcactccttggtacttcaacagccactttcttttcttctagta |
51369586 |
T |
|
| Q |
152 |
ctcttgaaaacaaacattggtcaagtaaataaggcaatgtcacaagaacatgcccaagataaagcatttcaaagactgaactt |
234 |
Q |
| |
|
||||| | ||||||| |||||||||| |||||||||||| ||||||||||||||||||| |||||| |||| |||||||||| |
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|
| T |
51369587 |
atcttgcatacaaacactggtcaagtatataaggcaatgtgacaagaacatgcccaagatgaagcatctcaacgactgaactt |
51369669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 34 - 246
Target Start/End: Complemental strand, 29954984 - 29954772
Alignment:
| Q |
34 |
atacttcctttctcgtctactattaccaacctcaatgttttagcaacacaatccctattaatggccccatctggctcactccttggtacctcaacagcca |
133 |
Q |
| |
|
|||||||||| ||| || |||||| ||||||||||||||| || | | |||||| ||| || ||||||| ||||||||||||||||||||| |||| |
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|
| T |
29954984 |
atacttccttcctcatccactattgccaacctcaatgtttgggctatcgagtccctagtaaaggacccatcttgctcactccttggtacctcaattgcca |
29954885 |
T |
|
| Q |
134 |
ctttcttttcttctagtactcttgaaaacaaacattggtcaagtaaataaggcaatgtcacaagaacatgcccaagataaagcatttcaaagactgaact |
233 |
Q |
| |
|
| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| || |||| | |||| |||||||| |
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|
| T |
29954884 |
ccttcttttcttctagtgctcttgaaaacaaacattggtcaggtaaataaggcaatgtcacaaggacatgcccaaaatgaagcttctcaatgactgaacc |
29954785 |
T |
|
| Q |
234 |
tggaccacaatga |
246 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
29954784 |
tgaaccacaatga |
29954772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 22 - 242
Target Start/End: Complemental strand, 11532309 - 11532089
Alignment:
| Q |
22 |
ttgttcctgtaaatacttcctttctcgtctactattaccaacctcaatgttttagcaacacaatccctattaatggccccatctggctcactccttggta |
121 |
Q |
| |
|
||||| ||||| ||||||||| ||| || | ||||||||||||||||||||| || || | |||||| ||| || ||| ||| |||||||||||||| |
|
|
| T |
11532309 |
ttgtttctgtacgtacttccttcctcatccattattaccaacctcaatgttttggctactgagtccctagtaaaggacccgtctttctcactccttggta |
11532210 |
T |
|
| Q |
122 |
cctcaacagccactttcttttcttctagtactcttgaaaacaaacattggtcaagtaaataaggcaatgtcacaagaacatgcccaagataaagcatttc |
221 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||| || |||| | || |
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|
| T |
11532209 |
cctcaatagccactttcttttcttctagtactcttgagaacaaacattggtcaattaaataaggcaatgtcacaagagcatgcccaaaatgaagcttctc |
11532110 |
T |
|
| Q |
222 |
aaagactgaacttggaccaca |
242 |
Q |
| |
|
|| |||||||| || |||||| |
|
|
| T |
11532109 |
aatgactgaacctgaaccaca |
11532089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 101; Significance: 4e-50; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 34 - 246
Target Start/End: Complemental strand, 20493119 - 20492907
Alignment:
| Q |
34 |
atacttcctttctcgtctactattaccaacctcaatgttttagcaacacaatccctattaatggccccatctggctcactccttggtacctcaacagcca |
133 |
Q |
| |
|
|||||||||| ||| || |||||| |||||||||||||||| || | | | |||||| ||| || ||||||| ||||| ||||||||||||||| ||||| |
|
|
| T |
20493119 |
atacttccttcctcatccactattgccaacctcaatgttttggctatagagtccctagtaaaggacccatcttgctcattccttggtacctcaatagcca |
20493020 |
T |
|
| Q |
134 |
ctttcttttcttctagtactcttgaaaacaaacattggtcaagtaaataaggcaatgtcacaagaacatgcccaagataaagcatttcaaagactgaact |
233 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||| || |||| | |||| |||||||| |
|
|
| T |
20493019 |
atttcctttcttctagttctcttgaaaacaaacattgatcaattaaataaggcaatgtcacaagtacatgcccaaaatgaagcttctcaatgactgaacc |
20492920 |
T |
|
| Q |
234 |
tggaccacaatga |
246 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
20492919 |
tgaaccacaatga |
20492907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 22 - 203
Target Start/End: Complemental strand, 1362346 - 1362165
Alignment:
| Q |
22 |
ttgttcctgtaaatacttcctttctcgtctactattaccaacctcaatgttttagcaacacaatccctattaatggccccatctggctcactccttggta |
121 |
Q |
| |
|
||||||||| || ||||||||| ||| || || ||| |||||||||||| | ||| ||| | |||||| ||| | ||||||| |||||||||||||| |
|
|
| T |
1362346 |
ttgttcctgaaactacttccttcctcatccacaattgccaacctcaatgagtgagccacagagtccctagtaaaagacccatcttcctcactccttggta |
1362247 |
T |
|
| Q |
122 |
cctcaacagccactttcttttcttctagtactcttgaaaacaaacattggtcaagtaaataaggcaatgtcacaagaacatg |
203 |
Q |
| |
|
|||||||||||||| |||||| | | | | ||||||||||||||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
1362246 |
cctcaacagccactcccttttccaccaatgcccttgaaaacaaacattggtcaagcaaataaggcagtgtcacaagaacatg |
1362165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 22 - 208
Target Start/End: Complemental strand, 1355460 - 1355274
Alignment:
| Q |
22 |
ttgttcctgtaaatacttcctttctcgtctactattaccaacctcaatgttttagcaacacaatccctattaatggccccatctggctcactccttggta |
121 |
Q |
| |
|
||||||||| || ||||||||| ||| || || ||| |||||||||||| | ||| ||| | |||||| ||| | ||||||| |||||||||||||| |
|
|
| T |
1355460 |
ttgttcctgaaactacttccttcctcatccacaattgccaacctcaatgagtgagccacagagtccctagtaaaagacccatcttcctcactccttggta |
1355361 |
T |
|
| Q |
122 |
cctcaacagccactttcttttcttctagtactcttgaaaacaaacattggtcaagtaaataaggcaatgtcacaagaacatgcccaa |
208 |
Q |
| |
|
| ||||||||||||| |||||| | | | | |||||||||||||| |||||||| |||||||||| ||||||||||||||| |||| |
|
|
| T |
1355360 |
cttcaacagccacttccttttccaccaatgcccttgaaaacaaacactggtcaagcaaataaggcagtgtcacaagaacatggccaa |
1355274 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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