View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15708_low_3 (Length: 250)
Name: NF15708_low_3
Description: NF15708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15708_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 133; Significance: 3e-69; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 1623106 - 1622974
Alignment:
| Q |
1 |
tctggtctttgatcatttatgttgtgctatagctatttctttactacctccgttattgtacttaattctttgtaattaagttcattgtaattattgtaag |
100 |
Q |
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| T |
1623106 |
tctggtctttgatcatttatgttgtgctatagctatttctttactacctccgttattgtacttaattctttgtaattaagttcattgtaattattgtaag |
1623007 |
T |
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| Q |
101 |
agcatgctcatattcttttgtacactttgagag |
133 |
Q |
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| T |
1623006 |
agcatgctcatattcttttgtacactttgagag |
1622974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 1605984 - 1605859
Alignment:
| Q |
1 |
tctggtctttgatcatttatgttgtgctatagctatttctttactacctccgttattgtacttaattctttgtaattaagttcattgtaattattgtaag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| | | |||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
1605984 |
tctggtctttgatcatttatgttgtgctatagctatttcttcattgcctcagttattgtacttaattctttgtaattaagttcattgtaattcttgtaag |
1605885 |
T |
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| Q |
101 |
agcatgctcatattcttttgtacact |
126 |
Q |
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| T |
1605884 |
agcatgctcatattcttttgtacact |
1605859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 195 - 238
Target Start/End: Complemental strand, 1622912 - 1622869
Alignment:
| Q |
195 |
cgttgtacaatcatacattgagtttgagaggagctattaagaat |
238 |
Q |
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| T |
1622912 |
cgttgtacaatcatacattgagtttgagaggagctattaagaat |
1622869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 18780800 - 18780677
Alignment:
| Q |
1 |
tctggtctttgatcatttatgttgtgctatagctatttctttactacctccgttattgtacttaattctttgtaattaagttcattgtaattattgtaag |
100 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| | | | || ||||||||||||||||||||||||||| |||||||||||| ||||||| |
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| T |
18780800 |
tctggtctttgatcttttatgttgtgctatagctatttcttcattgcttcaattattgtacttaattctttgtaattaaattcattgtaattcttgtaag |
18780701 |
T |
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| Q |
101 |
agcatgctcatattcttttgtaca |
124 |
Q |
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||||| | |||||||||||||||| |
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| T |
18780700 |
agcatacccatattcttttgtaca |
18780677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 237
Target Start/End: Complemental strand, 18780607 - 18780565
Alignment:
| Q |
195 |
cgttgtacaatcatacattgagtttgagaggagctattaagaa |
237 |
Q |
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|||||||||||||||| ||||||||||| | |||||||||||| |
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| T |
18780607 |
cgttgtacaatcataccttgagtttgagggaagctattaagaa |
18780565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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